Rhodobacter capsulatus 37b4 |
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Putative Rhodobacter capsulatus 37b4 RM systems
Ref: Binte Alim,N.T. et al. unpublished
REBASE ref # 36417
Complete sequence: 3,912,233 bp
GenBank #: CP119563
REBASE acronym: Rca37b4
Org_num: 65904
All begin PUH89_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5360 | 194 aa hypothetical protein | |||
| 5365 | R | Hba13ORF10095P (95% identity) | Rca37b4ORF5380P | |
| 5370 | virulence RhuM family protein | |||
| 5375 | S | S.PspM18ORF7250P (54% identity) | S.Rca37b4ORF5380P | |
| 5380 | M | M.PspM18ORF7250P (89% identity) | M.Rca37b4ORF5380P | |
| 5385 | 229 aa hypothetical protein | |||
| 5610 | SprT family zinc-dependent metalloprotease | |||
| 5615 | R | PspAK26ORF6575P (90% identity) | Rca37b4ORF5625P | |
| 5620 | S | S.TsuHLORF1779P (40% identity) | S.Rca37b4ORF5625P | |
| 5625 | M | M.RspAB29ORF9155P (90% identity) | M.Rca37b4ORF5625P | |
| 5630 | 229 aa hypothetical protein | |||
| 5730 | 43 aa hypothetical protein | |||
| 5735 | M | M.AviF25ORF4605P (36% identity) | M.Rca37b4ORF5735AP | |
| 5740 | IS3 family transposase | |||
| 5745 | M | M.Pye20ORF20650P (46% identity) | M.Rca37b4ORF5735BP | |
| 5750 | 240 aa hypothetical protein | |||
| 12075 | type II toxin-antitoxin system Phd/YefM family | |||
| 12080 | R | BspBE17ORF8645P (96% identity) | Rca37b4ORF12095P | |
| 12085 | S | S.BspDS20ORF16910P (59% identity) | S.Rca37b4ORF12095P | |
| 12090 | AAA family ATPase | |||
| ??? | M | M.BspBE17ORF8645P (95% identity) | M.Rca37b4ORF12095P | |
| 12105 | 125 aa hypothetical protein | |||
| 13675 | 364 aa hypothetical protein | |||
| 13680 | M | M.RcaY262ORF11125P (95% identity) | M.Rca37b4ORF13680P | |
| 13685 | S | S.Ssp101ORF7145P (30% identity) | S.Rca37b4ORF13680P | |
| 13690 | R | RcaYW2ORF4480P (97% identity) | Rca37b4ORF13680P | |
| 13695 | 100 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1050 | MarR family winged helix-turn-helix | |||
| 1055 | M | M.RcaB41ORF15980P (100% identity) | GANTC | M.Rca37b4ORF1055P |
| 1060 | ribonuclease HII | |||
| 5035 | 256 aa hypothetical protein | |||
| 5040 | M | M1.Rba558ORF5180P (93% identity) | M1.Rca37b4ORF5040P | |
| 5045 | M | M1.RspAB25ORF20900P (96% identity) | M2.Rca37b4ORF5040P | |
| 5050 | helix-turn-helix domain-containing protein | |||
| 5110 | 221 aa hypothetical protein | |||
| ??? | M | M.Pfi22803ORF11095P (88% identity) | M.Rca37b4ORFAP | |
| 5120 | helix-turn-helix domain-containing protein | |||
| 5340 | DUF3489 domain-containing protein | |||
| 5345 | M | M1.Pye20ORF22550P (92% identity) | M1.Rca37b4ORF5345P | |
| 5350 | M | M2.PamBM109ORFDP (96% identity) | M2.Rca37b4ORF5345P | |
| 5355 | DUF4868 domain-containing protein | |||
| 5385 | 229 aa hypothetical protein | |||
| ??? | M | M.RanZS228ORFLP (66% identity) | M.Rca37b4ORF5390P | |
| 5400 | helix-turn-helix domain-containing protein | |||
| 5590 | 71 aa hypothetical protein | |||
| 5595 | M | M2.RspAB25ORF20900P (92% identity) | M1.Rca37b4ORF5595P | |
| 5600 | M | M2.Rca37b4ORF5040P (96% identity) | M2.Rca37b4ORF5595P | |
| 5605 | 305 aa hypothetical protein | |||
| 5680 | 324 aa hypothetical protein | |||
| 5685 | M | M.Mlo7ORF27165P (53% identity) | M.Rca37b4ORF5685P | |
| 5690 | recombinase family protein | |||
| 8530 | type II toxin-antitoxin system RelE/ParE family | |||
| 8535 | M | M.RcaA12ORF8225P (89% identity) | M1.Rca37b4ORF8535P | |
| 8540 | DpnII family type II restriction endonuclease | |||
| 8545 | M | M.Rca37b4ORF14105P (97% identity) | M2.Rca37b4ORF8535P | |
| 8550 | 115 aa hypothetical protein | |||
| 12110 | 70 aa hypothetical protein | |||
| 12115 | M | M2.Pye20ORF22550P (96% identity) | M1.Rca37b4ORF12115P | |
| 12120 | M | M2.RanZS228ORFQP (92% identity) | M2.Rca37b4ORF12115P | |
| 12125 | 98 aa hypothetical protein | |||
| 14100 | glycine zipper family protein | |||
| 14105 | M | M.RcaYW1ORF260P (99% identity) | M.Rca37b4ORF14105P | |
| 14110 | DDE-type integrase/transposase/recombinase | |||
| 18065 | WYL domain-containing protein | |||
| 18070 | RM | SspLF16ORFAP (71% identity) | Rca37b4ORF18070P | |
| 18075 | DEAD/DEAH box helicase family protein | |||
| 18220 | IS110 family transposase | |||
| 18225 | M | M.PyeTT13ORF13725P (37% identity) | M.Rca37b4ORF18225P | |
| 18230 | ParB N-terminal domain-containing protein | |||
| 18225 | DNA cytosine methyltransferase | |||
| 18230 | M | M.PyeTT13ORF13730P (96% identity) | M.Rca37b4ORF18230P | |
| 18235 | DUF6362 family protein | |||
| 18385 | N-6 DNA methylase | |||
| 18390 | M | M.RspTHAF9ORF15535P (78% identity) | M.Rca37b4ORF18390P | |
| 18395 | HNH endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13825 | IS256 family transposase | |||
| 13830 | R | Rma10ORF10330P (74% identity) | Rca37b4ORF13830P | |
| 13835 | class I SAM-dependent methyltransferase | |||