Escherichia coli BY63 |
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Putative Escherichia coli BY63 RM systems
Ref: Fu,S. et al. unpublished
REBASE ref # 36318
| Sequence length: | GenBank #: | |
| Chromosome: | 4,770,033 bp | CP090570 |
| plasmid pBY63-2: | 92,267 bp | CP090572 |
REBASE acronym: EcoBY63
Org_num: 65460
All begin LZE53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9610 | IS4-like element ISVsa5 family transposase | |||
| 9615 | M | M.EcoBY68ORF9620P (100% identity) | M.EcoBY63ORF9615P | |
| 9620 | S | S1.EcoBY68ORF9620P (100% identity) | S.EcoBY63ORF9615P | |
| 9625 | YecA family protein | |||
| 9630 | R | EcoC1730ORF9820P (100% identity) | EcoBY63ORF9615P | |
| 9635 | M48 family metallopeptidase | |||
| 20000 | IS3-like element IS3 family transposase | |||
| 20005 | S | S.EcoBY68ORF20015P (100% identity) | S.EcoBY63ORF20005P | |
| 20010 | R | EcoYPE3ORF20380P (100% identity) | EcoBY63ORF20005P | |
| 20020 | NADPH-dependent aldehyde reductase Ahr | |||
| 20790 | IS66-like element accessory protein TnpA | |||
| 20795 | R | EcoH66ORFGP (100% identity) | EcoBY63ORF20825P | |
| 20800 | S | S.SflFF80ORF4075P (62% identity) | S2.EcoBY63ORF20825P | |
| 20805 | IS5 family transposase | |||
| 20810 | 128 aa hypothetical protein | |||
| 20815 | IS5 family transposase | |||
| 20820 | S | S1.EcoH66ORFGP (100% identity) | S1.EcoBY63ORF20825P | |
| 20825 | M | M.EcoH66ORFGP (100% identity) | M.EcoBY63ORF20825P | |
| 20830 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1835 | cell division protein DamX | |||
| 1840 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoBY63DamP |
| 1845 | ribulose-phosphate 3-epimerase | |||
| 2480 | DUF2556 family protein | |||
| 2485 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoBY63ORF2485P |
| 2490 | DNA-binding transcriptional regulator Fis | |||
| 3925 | ProQ/FinO family protein | |||
| 3930 | M | M.SflFF24DndBP (100% identity) | M.EcoBY63DndBP | |
| 3935 | DNA phosphorothioation system sulfurtransferase | |||
| 3930 | DNA sulfur modification protein DndB | |||
| 3935 | M | M.SflFF24DndCP (100% identity) | M.EcoBY63DndCP | |
| 3940 | DNA sulfur modification protein DndD | |||
| 3935 | DNA phosphorothioation system sulfurtransferase | |||
| 3940 | M | M.SflFF24DndDP (100% identity) | M.EcoBY63DndDP | |
| 3945 | DNA sulfur modification protein DndE | |||
| 3940 | DNA sulfur modification protein DndD | |||
| 3945 | M | M.SflFF24DndEP (100% identity) | M.EcoBY63DndEP | |
| 3950 | DGQHR domain-containing protein | |||
| 3960 | accessory gene regulator B family protein | |||
| 3965 | R | EcoH66DptHP (100% identity) | EcoBY63DptHP | |
| 3970 | DNA phosphorothioation-dependent restriction | |||
| 3965 | DNA phosphorothioation-dependent restriction | |||
| 3970 | R | SflFF24DptGP (100% identity) | EcoBY63DptGP | |
| 3975 | DNA phosphorothioation-dependent restriction | |||
| 3970 | DNA phosphorothioation-dependent restriction | |||
| 3975 | R | SflFF24DptFP (100% identity) | EcoBY63DptFP | |
| 3980 | integrase | |||
| 7070 | recombination protein NinB | |||
| 7075 | M | M.EcoH66ORFCP (96% identity) | GATC | M.EcoBY63ORF7075P |
| 7080 | phosphoadenosine phosphosulfate reductase family | |||
| 9275 | phosphohydrolase | |||
| 9280 | M | M.EcoH66DcmP (100% identity) | CCWGG | M.EcoBY63DcmP |
| 9285 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoBY63DcmP |
| 9290 | drug/metabolite exporter YedA | |||
| 10000 | recombination protein NinB | |||
| 10005 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoBY63ORF10005P |
| 10010 | NinE family protein | |||
| 11825 | 73 aa hypothetical protein | |||
| 11830 | M | M.EcoH66ORFDP (100% identity) | M.EcoBY63ORF11830P | |
| 11835 | 54 aa hypothetical protein | |||
| 18080 | NinE family protein | |||
| 18085 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoBY63ORF18085P |
| 18090 | recombination protein NinB | |||
| 19980 | HNH endonuclease | |||
| 19985 | R | SflFF17ORF19275P (100% identity) | EcoBY63ORF19985P | |
| 19990 | McrC family protein | |||
| plasmid pBY63-2 | ||||
| 23990 | 97 aa hypothetical protein | |||
| 23995 | M | M.Xca80ORFEP (100% identity) | M.EcoBY63ORF23995P | |
| 24000 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19985 | HNH endonuclease | |||
| 19990 | R | EcoBY68McrCP (100% identity) | EcoBY63McrCP | |
| 19995 | ATP-binding protein | |||