Escherichia coli BY68 |
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Putative Escherichia coli BY68 RM systems
Ref: Fu,S. et al. unpublished
REBASE ref # 36318
| Sequence length: | GenBank #: | |
| Chromosome: | 4,770,033 bp | CP090212 |
| plasmid pBY68-1: | 103,545 bp | CP090213 |
| plasmid pBY68-2: | 92,267 bp | CP090214 |
REBASE acronym: EcoBY68
Org_num: 65461
All begin LVJ26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9615 | IS4-like element ISVsa5 family transposase | |||
| 9620 | M | M.EcoBY63ORF9615P (100% identity) | M.EcoBY68ORF9620P | |
| 9625 | S | S.EcoBY63ORF9615P (100% identity) | S1.EcoBY68ORF9620P | |
| 9630 | YecA family protein | |||
| 9635 | R | EcoC1730ORF9820P (100% identity) | EcoBY68ORF9620P | |
| 9640 | M48 family metallopeptidase | |||
| 20010 | IS3-like element IS3 family transposase | |||
| 20015 | S | S.EcoBY63ORF20005P (100% identity) | S.EcoBY68ORF20015P | |
| 20020 | R | EcoYPE3ORF20380P (100% identity) | EcoBY68ORF20015P | |
| 20030 | NADPH-dependent aldehyde reductase Ahr | |||
| 20800 | IS66-like element accessory protein TnpA | |||
| 20805 | R | EcoH66ORFGP (100% identity) | EcoBY68ORF20835P | |
| 20810 | S | S.SflFF80ORF4075P (62% identity) | S2.EcoBY68ORF20835P | |
| 20815 | IS5 family transposase | |||
| 20820 | 128 aa hypothetical protein | |||
| 20825 | IS5 family transposase | |||
| 20830 | S | S1.EcoH66ORFGP (100% identity) | S1.EcoBY68ORF20835P | |
| 20835 | M | M.EcoH66ORFGP (100% identity) | M.EcoBY68ORF20835P | |
| 20840 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1840 | cell division protein DamX | |||
| 1845 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoBY68DamP |
| 1850 | ribulose-phosphate 3-epimerase | |||
| 2485 | DUF2556 family protein | |||
| 2490 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoBY68ORF2490P |
| 2495 | DNA-binding transcriptional regulator Fis | |||
| 3930 | ProQ/FinO family protein | |||
| 3935 | M | M.SflFF24DndBP (100% identity) | M.EcoBY68DndBP | |
| 3940 | DNA phosphorothioation system sulfurtransferase | |||
| 3935 | DNA sulfur modification protein DndB | |||
| 3940 | M | M.SflFF24DndCP (100% identity) | M.EcoBY68DndCP | |
| 3945 | DNA sulfur modification protein DndD | |||
| 3940 | DNA phosphorothioation system sulfurtransferase | |||
| 3945 | M | M.SflFF24DndDP (100% identity) | M.EcoBY68DndDP | |
| 3950 | DNA sulfur modification protein DndE | |||
| 3945 | DNA sulfur modification protein DndD | |||
| 3950 | M | M.SflFF24DndEP (100% identity) | M.EcoBY68DndEP | |
| 3955 | DGQHR domain-containing protein | |||
| 3965 | accessory gene regulator B family protein | |||
| 3970 | R | EcoH66DptHP (100% identity) | EcoBY68DptHP | |
| 3975 | DNA phosphorothioation-dependent restriction | |||
| 3970 | DNA phosphorothioation-dependent restriction | |||
| 3975 | R | SflFF24DptGP (100% identity) | EcoBY68DptGP | |
| 3980 | DNA phosphorothioation-dependent restriction | |||
| 7075 | recombination protein NinB | |||
| 7080 | M | M.EcoH66ORFCP (96% identity) | GATC | M.EcoBY68ORF7080P |
| 7085 | phosphoadenosine phosphosulfate reductase family | |||
| 9280 | phosphohydrolase | |||
| 9285 | M | M.EcoH66DcmP (100% identity) | CCWGG | M.EcoBY68DcmP |
| 9290 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoBY68DcmP |
| 9295 | drug/metabolite exporter YedA | |||
| 10005 | recombination protein NinB | |||
| 10010 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoBY68ORF10010P |
| 10015 | NinE family protein | |||
| 11830 | 73 aa hypothetical protein | |||
| 11835 | M | M.EcoH66ORFDP (100% identity) | M.EcoBY68ORF11835P | |
| 11840 | 54 aa hypothetical protein | |||
| 18090 | NinE family protein | |||
| 18095 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoBY68ORF18095P |
| 18100 | recombination protein NinB | |||
| 19990 | HNH endonuclease | |||
| 19995 | R | SflFF17ORF19275P (100% identity) | EcoBY68ORF19995P | |
| 20000 | McrC family protein | |||
| plasmid pBY68-1 | ||||
| 23275 | IS6-like element IS26 family transposase | |||
| 23280 | R | EcoBY63ORF23275P (100% identity) | CCWGG | EcoBY68ORF23285P |
| 23285 | M | M.Sen8b1ORF15518P (100% identity) | CCWGG | M.EcoBY68ORF23285P |
| 23290 | IS1 family transposase | |||
| plasmid pBY68-2 | ||||
| 24000 | 97 aa hypothetical protein | |||
| 24005 | M | M.Xca80ORFEP (100% identity) | M.EcoBY68ORF24005P | |
| 24010 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19995 | HNH endonuclease | |||
| 20000 | R | EcoBY63McrCP (100% identity) | EcoBY68McrCP | |
| 20005 | ATP-binding protein | |||