Helicobacter pylori HPAG1 |
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Putative Helicobacter pylori HPAG1 RM systems
Ref: Oh,J.D. et al. Proc. Natl. Acad. Sci. U.S.A. (2006) In press
REBASE ref # 9529
Complete sequence: 1,596,366 bp
GenBank #: CP000241 (NC_008086)
REBASE acronym: HpyH
Org_num: 4450
All begin HPAG1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 436 | polyphosphate kinase | |||
| 437 | S | S.HpyC026ORF5480P (98% identity) | S.HpyHORF438P | |
| 438 | M | M.HpyBGR10ORF2130P (96% identity) | M.HpyHORF438P | |
| ??? | R | HpyBGR3IIIP (88% identity) | HpyHORF438P | |
| 441 | 631 aa hypothetical protein | |||
| 774 | outer membrane protein HofF | |||
| 775 | S | S.HpyPO107ORF3870P (95% identity) | S.HpyHORF775P | |
| 776 | cadmium-transporting ATPase | |||
| 830 | thiamine phosphate pyrophosphorylase | |||
| 831 | R | HpyCA26XIVP (92% identity) | HpyHORF833P | |
| 832 | S | S.HpyV009ORF2865P (75% identity) | S.HpyHORF833P | |
| 833 | M | M.HpyU123XV (93% identity) | M.HpyHORF833P | |
| 834 | 228 aa conserved hypothetical integral membrane | |||
| 1461 | 303 aa hypothetical protein | |||
| 1462 | S | S.HpyPE102ORF3825P (97% identity) | S.HpyHORF1464P | |
| 1463 | 258 aa hypothetical protein | |||
| ??? | M | M.HpyNP08ORF6720P (93% identity) | M.HpyHORF1464P | |
| 1466 | R | HpyIS11ORF7335P (94% identity) | HpyHORF1464P | |
| 1467 | 76 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | 330 aa hypothetical protein | |||
| 46 | M | M1.HpyF013VII (98% identity) | CCTC | M1.HpyHORF46P |
| 47 | M | M2.HpySP103VP (97% identity) | CCTC | M2.HpyHORF46P |
| 48 | type II DNA modification enzyme | |||
| 47 | cytosine specific DNA methyltransferase | |||
| 48 | M | M.HpySP315XI (99% identity) | GTSAC | M.HpyHORF48P |
| ??? | R | HpyC005IIIP (99% identity) | GTSAC | HpyHORF48P |
| 51 | adenine/cytosine DNA methyltransferase | |||
| 92 | HrgA protein | |||
| 93 | M | M.HpyC102VI (97% identity) | GATC | M.HpyHORF93P |
| 94 | alpha-1,2-fucosyltransferase | |||
| 261 | exonuclease VII, large subunit | |||
| 262 | M | M.HpyIS6XI (98% identity) | TCGA | M.HpyHORF262P |
| 263 | 152 aa hypothetical protein | |||
| 263 | 152 aa hypothetical protein | |||
| 264 | R | HpyKH1ORFJP (90% identity) | CCGG | HpyHORF264P |
| 265 | M | M.HpyZ011III (99% identity) | CCGG | M.HpyHORF264P |
| 266 | ATP-dependent protease binding subunit/heat | |||
| 312 | 293 aa hypothetical protein | |||
| 313 | R | HpySW16XIP (99% identity) | CTNAG | HpyHI |
| 314 | M | M.HpyPE110VIII (99% identity) | CTNAG | M.HpyHI |
| 315 | 128 aa hypothetical protein | |||
| 454 | outer membrane protein HopJ | |||
| 455 | M | M.HpyLI23V (97% identity) | ATTAAT | M.HpyHORF455P |
| 456 | DD-heptosyltransferase | |||
| 457 | GTP-binding protein | |||
| 458 | M | M.HpyI012IV (98% identity) | ACNGT | M.HpyHORF458P |
| 459 | R | HpyKH30ORFYP (89% identity) | ACNGT | HpyHORF458P |
| 460 | type II DNA modification enzyme | |||
| 459 | type II restriction endonuclease | |||
| 460 | M | M.HpySP401ORF2600P (88% identity) | ACGT | M.HpyHORF460P |
| 461 | catalase like protein | |||
| 477 | DNA gyrase subunit B | |||
| 478 | M | M.HpySW24VIII (99% identity) | GTAC | M.HpyHII |
| 479 | R | HpyLI24XVIIP (98% identity) | GTAC | HpyHII |
| 480 | outer membrane protein | |||
| 651 | glycerol-3-phosphate dehydrogenase | |||
| ??? | RM | HpyLI12ORF3175P (92% identity) | HpyHORF652P | |
| 654 | outer membrane protein HorF | |||
| 671 | 276 aa hypothetical protein | |||
| 672 | M | M.HpyR09IV (100% identity) | CCNNGG | M.HpyHORF672P |
| 673 | R | HpySW36VIP (99% identity) | CCNNGG | HpyHORF672P |
| 674 | 119 aa hypothetical protein | |||
| 890 | flagellar hook protein | |||
| 891 | R | Hpy8I (91% identity) | GTNNAC | HpyHORF892P |
| 892 | M | M.HpyT016XII (98% identity) | GTNNAC | M.HpyHORF892P |
| 893 | rep helicase, single-stranded DNA-dependent | |||
| 1022 | biotin carboxylase | |||
| ??? | M | M.HpyMM12XII (99% identity) | TCNNGA | M.HpyHORF1023P |
| ??? | R | HpyCOL10XIP (99% identity) | TCNNGA | HpyHORF1023P |
| 1027 | 197 aa hypothetical protein | |||
| 1058 | 144 aa hypothetical protein | |||
| 1059 | M | M.HpyBG6XIII (95% identity) | GCGC | M.HpyHORF1059P |
| 1060 | flgM protein | |||
| 1148 | 222 aa hypothetical protein | |||
| 1149 | M | M.HpySW28I (100% identity) | CATG | M.HpyHORF1149P |
| ??? | R | HpyCA8IP (99% identity) | CATG | HpyHORF1149P |
| 1152 | serine acetyltransferase | |||
| 1297 | carboxyl-terminal protease | |||
| ??? | R | HpySW24IVP (100% identity) | GANTC | HpyHORF1300P |
| 1300 | M | M.HpySW24IV (99% identity) | GANTC | M.HpyHORF1300P |
| 1301 | adenine specific DNA methyltransferase | |||
| 1300 | adenine specific DNA methyltransferase | |||
| 1301 | RM | HpySP309ORF5340P (86% identity) | HpyHORF1301P | |
| 1302 | nicotinate-nucleotide pyrophosphorylase | |||
| 1394 | type III R-M system restriction enzyme | |||
| 1395 | RM | HpyL025XVIII (92% identity) | HpyHORF1395P | |
| 1396 | 30 aa hypothetical protein | |||
| 1411 | outer membrane protein HopK | |||
| 1412 | R | HpySW12ORF7335P (98% identity) | CCATC | HpyHORF1413P |
| 1413 | M | M1.HpySW14VIII (99% identity) | CCATC | M2.HpyHORF1413P |
| 1414 | M | M2.HpySW07VIII (98% identity) | GATGG | M1.HpyHORF1413P |
| 1415 | 355 aa hypothetical protein | |||
| 1440 | 191 aa hypothetical protein | |||
| ??? | RM | HpyPO12ORF7345P (98% identity) | HpyHORF1441P | |
| 1444 | S | S.HpyGE20VI (69% identity) | S.HpyHORF1441P | |
| 1445 | DNA polymerase I | |||
| 1484 | 68 aa hypothetical protein | |||
| 1485 | M | M.HpyU201XIII (98% identity) | TGCA | M.HpyHORF1485P |
| 1486 | R | HpyLI21XIIP (99% identity) | TGCA | HpyHORF1485P |
| 1487 | ubiquinol cytochrome c oxidoreductase, | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1312 | response regulator | |||
| ??? | M | M.HpyPOR110ORF7585P (94% identity) | M.HpyHORF1313P | |
| ??? | R | HpyL034ORF6605P (94% identity) | HpyHORF1313P | |
| 1317 | rod shape-determining protein | |||
| 1327 | endonuclease G | |||
| 1328 | M | M.HpyJ016ORF6700P (96% identity) | M.HpyHORF1328P | |
| 1329 | R | HpyIS2ORF6540P (93% identity) | HpyHORF1328P | |
| 1330 | biotin synthetase | |||
| 1392 | DNA recombinase | |||
| 1393 | M | M.HpyBGR5ORF7360P (97% identity) | M.HpyHORF1393P | |
| 1394 | R | HpyP108ORF6810P (95% identity) | HpyHORF1393P | |
| 1395 | type IIS restriction-modification protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 486 | glutamine synthetase | |||
| 487 | R | HpyP008GmrSDP (86% identity) | HpyHGmrSDP | |
| 488 | ribosomal protein L9 | |||