Helicobacter acinonychis Sheeba |
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Putative Helicobacter acinonychis Sheeba RM systems
Ref: Eppinger,M. et al. PLoS Genet. 2 (7), E120 (2006)
REBASE ref # 9559
Complete sequence: 1,553,927 bp
GenBank #: AM260522 (NC_008229)
REBASE acronym: HacS
Org_num: 4461
All begin Hac_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 908 | hof-family outer membrane protein | |||
| ??? | S | 198 aa hypothetical protein Hac_0910 | S.HacSORF910P | |
| 912 | hypothetical protein fragment 1 | |||
| 1106 | 631 aa conserved hypothetical protein | |||
| ??? | R | Hac2129ORFXP (88% identity) | HacSORF1111P | |
| 1111 | M | M.Hac2129ORFXP (98% identity) | M.HacSORF1111P | |
| ??? | S | S.Hac12686ORF776P (100% identity) | S.HacSORF1111P | |
| 1114 | Polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9 | type III restriction enzyme | |||
| ??? | RM | Hac12686ORF1373P (99% identity) | HacSORF9P | |
| 13 | Tryptophan synthase alpha chain | |||
| 84 | 330 aa conserved hypothetical protein | |||
| ??? | M | M2.Hac12686ORF1297P (88% identity) | CCTC | M1.HacSORF85P |
| ??? | M | M1.Hac12686ORF1297P (95% identity) | CCTC | M2.HacSORF85P |
| 95 | outer membrane protein 2 | |||
| ??? | type III restriction enzyme R protein | |||
| 185 | M | M2.Hac12686III (100% identity) | GAAGA | M1.HacSORF185P |
| ??? | M | M1.Hac2129ORFPP (47% identity) | GAAGA | M2.HacSORF185P |
| 188 | R | Hac12686IIIP (91% identity) | GAAGA | HacSORF185P |
| 190 | two-component regulator | |||
| 200 | nicotinate-nucleotide pyrophosphorylase | |||
| ??? | RM | Hac12686ORF1198P (92% identity) | HacSORF201P | |
| 204 | 101 aa conserved hypothetical protein | |||
| 281 | O-sialoglycoprotein endopeptidase | |||
| 283 | M | M.Hac2129ORFAP (100% identity) | M.HacSORF283P | |
| 284 | 366 aa hypothetical protein | |||
| 304 | serine acetyltransferase | |||
| 305 | R | Hac2129ORFRP (96% identity) | CATG | HacSORF306P |
| 306 | M | M.Hac2129ORFRP (100% identity) | CATG | M.HacSORF306P |
| 307 | 3-deoxy-manno-octulosonate cytidylyltransferase | |||
| 358 | elongation factor P | |||
| 360 | M | M.Hac2129ORFSP (87% identity) | M.HacSORF360P | |
| 361 | 256 aa conserved hypothetical protein | |||
| 362 | R | R2.Hac12686ORF1050P (94% identity) | R1.HacSORF360P | |
| 363 | R | R2.HpyC125ORF860P (84% identity) | R2.HacSORF360P | |
| 364 | sialic acid synthase | |||
| 492 | 226 aa conserved hypothetical protein | |||
| 493 | R | Hac2129ORFBP (100% identity) | TCNNGA | HacSORF494P |
| 494 | M | M.Hac2129ORFBP (100% identity) | TCNNGA | M.HacSORF494P |
| 495 | deoxycytidine triphosphate deaminase | |||
| 518 | probable sugar nucleotide biosynthesis | |||
| 519 | R | Hac2129ORFB1P (100% identity) | CCGG | HacSORF520P |
| 520 | M | M.Hac2129ORFB1P (100% identity) | CCGG | M.HacSORF520P |
| 522 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 594 | FlgM protein | |||
| 595 | M | M.Hac2129ORFCP (100% identity) | GCGC | M.HacSORF595P |
| 596 | 144 aa conserved hypothetical protein | |||
| 822 | DNA gyrase subunit B | |||
| 823 | M | M.Hac2129ORFA1P (95% identity) | GTAC | M.HacSORF823P |
| 824 | 44 aa hypothetical protein fragment 1 | |||
| 825 | R | 76 aa hypothetical protein fragment 2 | GTAC | HacSORF823P |
| 826 | outer membrane protein 8 | |||
| 965 | 119 aa hypothetical protein | |||
| 966 | M | M.Hac2129ORFDP (100% identity) | GCNGC | M.HacSORF966P |
| 967 | GTP-binding protein | |||
| 1015 | 120 aa conserved hypothetical protein | |||
| 1016 | M | M.Hac12686VI (100% identity) | M.HacSORF1016P | |
| 1017 | R | Hac12686VIP (100% identity) | HacSORF1016P | |
| 1018 | polysaccharide deacetylase | |||
| 1074 | GTP-binding protein TYPA/BIPA homolog | |||
| 1075 | M | M.Hac2129ORFZP (100% identity) | ACNGT | M.HacSORF1075P |
| 1076 | 230 aa conserved hypothetical protein | |||
| 1212 | 245 aa conserved hypothetical protein | |||
| 1213 | M | M.Hac12686ORF870P (100% identity) | GGCC | M.HacSORF1213P |
| 1214 | R | Hac12686ORF870P (99% identity) | GGCC | HacSORF1213P |
| 1215 | 230 aa conserved hypothetical protein | |||
| 1295 | flagellar hook protein | |||
| 1296 | R | Hac2129ORFGP (96% identity) | GTNNAC | HacSORF1296P |
| 1297 | M | M.Hac12686X (97% identity) | GTNNAC | M.HacSORF1296P |
| 1298 | ATP-dependent DNA helicase | |||
| 1334 | integrase | |||
| ??? | RM | Hac12686ORF194P (99% identity) | HacSORF1335P | |
| 1337 | tautomerase | |||
| 1347 | 204 aa hypothetical protein | |||
| 1348 | M | M.Hac2129ORFHP (100% identity) | TCGA | M.HacSORF1348P |
| 1349 | exodeoxyribonuclease VII large subunit | |||
| 1511 | alpha-1,2-fucosyltransferase fragment 1 | |||
| 1512 | M | M.Hac2129ORFJP (100% identity) | GATC | M.HacSORF1512P |
| 1513 | HrgA protein fragment 2 | |||
| 1730 | biotin synthetase | |||
| 1731 | S | S.Hac2129ORFUP (100% identity) | S.HacSORF1732P | |
| 1732 | RM | Hac2129ORFUP (99% identity) | HacSORF1732P | |
| 1733 | 191 aa hypothetical protein HP1473 | |||
| 1781 | 67 aa conserved hypothetical protein | |||
| 1782 | M | M.Hac2129ORFKP (100% identity) | TGCA | M.HacSORF1782P |
| 1783 | R | Hac2129ORFKP (97% identity) | TGCA | HacSORF1782P |
| 1785 | biotin synthetase fragment | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | ATP-dependent DNA helicase | |||
| ??? | M | M.Hac12686ORF1375P (100% identity) | M.HacSORF7P | |
| 9 | R | Hac2129ORFMP (99% identity) | HacSORF7P | |
| ??? | type II DNA modification enzyme fragment 2 | |||
| 179 | 144 aa conserved hypothetical protein | |||
| ??? | R | type III restriction enzyme R protein | HacSORF180P | |
| 185 | modification methylase mjai | |||
| 709 | 53 aa hypothetical protein | |||
| ??? | M | M.Hac12686ORF434P (95% identity) | M.HacSORF710P | |
| 712 | 673 aa conserved hypothetical protein | |||
| 1415 | 54 aa conserved hypothetical protein | |||
| 1417 | M | M.Hac2129ORFIP (98% identity) | M.HacSORF1417P | |
| 1418 | R | Hac2129ORFIP (100% identity) | HacSORF1417P | |
| 1420 | 2-oxoglutarate ferredoxin oxidoreductase, gamma | |||
| 1719 | DNA polymerase I | |||
| 1720 | R | Hac12686ORF1444P (99% identity) | HacSORF1720P | |
| 1721 | M | M.Hac12686ORF1444P (99% identity) | M.HacSORF1720P | |
| 1723 | motility protein with HslJ and META | |||