Xanthomonas campestris pv. campestris 0474 |
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Putative Xanthomonas campestris pv. campestris 0474 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
| Sequence length: | GenBank #: | |
| Chromosome: | 4,985,333 bp | CP066950 |
| plasmid unnamed: | 64,473 bp | CP066952 |
REBASE acronym: Xca474
Org_num: 65568
All begin JH298_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6260 | M48 family metallopeptidase | |||
| 6265 | R | Xca8290ORF6370P (100% identity) | CAAGNNNNNCTTA | Xca474ORF6285P |
| 6270 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.Xca474ORF6285P |
| 6275 | 93 aa hypothetical protein | |||
| 6280 | damage-inducible protein D | |||
| 6285 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.Xca474ORF6285P |
| 6290 | restriction endonuclease subunit S | |||
| 15550 | 98 aa hypothetical protein | |||
| 15555 | R | Xca552ORF4830P (98% identity) | Xca474ORF15570P | |
| 15560 | S | S.Xcacc2ORF16555P (67% identity) | S.Xca474ORF15570P | |
| 15565 | virulence RhuM family protein | |||
| 15570 | M | M.XcaCN13aORFAP (99% identity) | M.Xca474ORF15570P | |
| 15575 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3030 | IS3-like element IS1404 family transposase | |||
| 3035 | R | XcaYORFAP (98% identity) | Xca474ORF3035P | |
| 3040 | 90 aa hypothetical protein | |||
| 5250 | 860 aa hypothetical protein | |||
| 5255 | M | M.Xca8284ORF5270P (100% identity) | M.Xca474ORF5255P | |
| 5260 | AIPR family protein | |||
| 5265 | PD-(D/E)XK motif protein | |||
| 5270 | Z1 domain-containing protein | |||
| 5275 | ATP-binding protein | |||
| 5280 | V | V.Xca8284ORF5270P (100% identity) | V.Xca474ORF5255P | |
| 5285 | HNH endonuclease | |||
| plasmid unnamed | ||||
| 21930 | SAM-dependent methyltransferase | |||
| 21935 | R | Xca11085ORF22270P (99% identity) | CTGCAG | Xca474ORF21940P |
| 21940 | M | M.Xca8284ORF21710P (99% identity) | CTGCAG | M.Xca474ORF21940P |
| 21945 | CopG family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7155 | 71 aa hypothetical protein | |||
| 7160 | R | Xcacc2McrBP (99% identity) | Xca474McrBP | |
| 7165 | R | XcaCN13aMcrCP (100% identity) | Xca474McrCP | |
| 7170 | sensor histidine kinase | |||
| 15570 | SAM-dependent DNA methyltransferase | |||
| 15575 | R | Xcacc2MrrP (100% identity) | Xca474MrrP | |
| 15580 | type II toxin-antitoxin system RelE/ParE family | |||