Helicobacter pylori H390d |
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Putative Helicobacter pylori H390d RM systems
Ref: Chen,Z. et al. unpublished
REBASE ref # 36052
Complete sequence: 1,591,405 bp
GenBank #: CP116234
REBASE acronym: HpyH390d
Org_num: 64573
All begin PHA49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4275 | outer membrane beta-barrel protein HofF | |||
| 4280 | S | S.HpyH390rORF4300P (100% identity) | S.HpyH390dORF4280P | |
| 4285 | heavy metal translocating P-type ATPase | |||
| 4560 | hydroxyethylthiazole kinase | |||
| 4565 | R | HpyH390rORF4595P (100% identity) | HpyH390dORF4575P | |
| 4570 | S | S.HpyH390rORF4595P (100% identity) | S.HpyH390dORF4575P | |
| ??? | M | M.HpyH390rORF4595P (79% identity) | M.HpyH390dORF4575P | |
| 4590 | COG2958 family protein | |||
| 4855 | 44 aa hypothetical protein | |||
| 4860 | R | HpyH390rORF4875P (72% identity) | CACNNNNNTC | HpyH390dORF4865P |
| 4865 | M | M.HpyH390rORF4875P (100% identity) | CACNNNNNTC | M.HpyH390dORF4865P |
| 4870 | S | S.HpyH390rORF4875P (100% identity) | CACNNNNNTC | S.HpyH390dORF4865P |
| 4880 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 714 aa hypothetical protein | |||
| ??? | RM | HpyH390rORF60P (100% identity) | HpyH390dORF55P | |
| 65 | 180 aa hypothetical protein | |||
| 290 | ComF family protein | |||
| 295 | RM | HpyH390rORF300P (100% identity) | CYANNNNNNTTC | HpyH390dORF295P |
| 300 | S | S.HpyH390rORF300P (100% identity) | CYANNNNNNTTC | S.HpyH390dORF295P |
| 305 | DNA polymerase I | |||
| 1265 | formamidase | |||
| 1270 | M | M1.HpyH390rORF1285P (100% identity) | M.HpyH390dORF1270AP | |
| 1275 | M | M2.HpyH390rORF1285P (100% identity) | M.HpyH390dORF1270BP | |
| 1280 | glutamine-hydrolyzing carbamoyl-phosphate | |||
| 1410 | serine O-acetyltransferase | |||
| 1415 | R | HpyH390rORF1435P (100% identity) | CATG | HpyH390dORF1420P |
| 1420 | M | M.HpyH390rORF1435P (100% identity) | CATG | M.HpyH390dORF1420P |
| 1425 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpyH390rORF1895P (100% identity) | GCGC | M.HpyH390dORF1875P |
| 1880 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | HpyH390dORF2055P |
| 2055 | M | M.HpyQ59ORFOP (100% identity) | TCNNGA | M.HpyH390dORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2700 | ATP-dependent helicase | |||
| 2705 | M | M.HpyH390rORF2725P (100% identity) | GTNNAC | M.HpyH390dORF2705P |
| 2710 | R | HpyH390rORF2725P (100% identity) | GTNNAC | HpyH390dORF2705P |
| 2715 | flagellar hook protein FlgE | |||
| 2910 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2915 | M | M.HpyH390rORF2940P (100% identity) | GTAC | M.HpyH390dORF2915P |
| 2920 | R | HpyH390rORF2940P (100% identity) | GTAC | HpyH390dORF2915P |
| 2925 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3755 | outer membrane protein | |||
| 3760 | RM | HpyH390rORF3785P (100% identity) | HpyH390dORF3760P | |
| 3765 | (Fe-S)-binding protein | |||
| 4740 | catalase | |||
| 4745 | R | HpyH390rORF4770P (100% identity) | ACGT | HpyH390dORF4750P |
| 4750 | M | M.HpyH390rORF4770P (100% identity) | ACGT | M.HpyH390dORF4750P |
| 4755 | GIY-YIG nuclease family protein | |||
| 4750 | DNA cytosine methyltransferase | |||
| 4755 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | HpyH390dORF4760P |
| 4760 | M | M.HpyH390rORF4780P (100% identity) | ACNGT | M.HpyH390dORF4760P |
| 4765 | translational GTPase TypA | |||
| 4770 | glycosyltransferase family 9 protein | |||
| 4775 | M | M.HpyH390rORF4795P (100% identity) | ATTAAT | M.HpyH390dORF4775P |
| 4780 | Hop family outer membrane protein HopJ/HopK | |||
| 5730 | AAA family ATPase | |||
| 5735 | M | M.HpyH390rORF5745P (100% identity) | CCGG | M.HpyH390dORF5735P |
| 5740 | R | HpyH390rORF5745P (100% identity) | CCGG | HpyH390dORF5735P |
| 5745 | 204 aa hypothetical protein | |||
| 5745 | 204 aa hypothetical protein | |||
| 5750 | M | M.HpyH390rORF5760P (100% identity) | TCGA | M.HpyH390dORF5750P |
| 5755 | exodeoxyribonuclease VII large subunit | |||
| 6565 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6570 | M | M.HpyH390rORF6575P (100% identity) | GATC | M.HpyH390dORF6570P |
| 6575 | R | HpyH390rORF6575P (100% identity) | GATC | HpyH390dORF6570P |
| 6585 | ACP S-malonyltransferase | |||
| 6760 | sodium/proline symporter PutP | |||
| 6765 | M | M1.HpyH390rORF6770P (100% identity) | M1.HpyH390dORF6765P | |
| 6770 | M | M2.HpyH390rORF6770P (100% identity) | CCTC | M2.HpyH390dORF6765P |
| 6775 | TerC family protein | |||
| 6815 | DNA methyltransferase | |||
| 6820 | R | HpyH390rORF6830P (100% identity) | GANTC | HpyH390dORF6825P |
| 6825 | M | M.HpyH390rORF6830P (100% identity) | GANTC | M.HpyH390dORF6825P |
| 6830 | N-6 DNA methylase | |||
| 6825 | DNA methyltransferase | |||
| ??? | RM | HpyH390rORF6835P (99% identity) | HpyH390dORF6830P | |
| 6840 | carboxylating nicotinate-nucleotide | |||
| 6890 | copper response regulator transcription factor | |||
| 6895 | R | HpyH390rORF6900P (100% identity) | GAAGA | HpyH390dORF6900P |
| 6900 | M | M1.HpyH390rORF6900P (100% identity) | GAAGA | M1.HpyH390dORF6900P |
| 6905 | M | M2.HpyH390rORF6900P (100% identity) | GAAGA | M2.HpyH390dORF6900P |
| 6910 | site-specific DNA-methyltransferase | |||
| 7375 | 107 aa hypothetical protein | |||
| 7380 | R | HpyH390rORF7385P (100% identity) | TGCA | HpyH390dORF7385P |
| 7385 | M | M.HpyH390rORF7385P (100% identity) | TGCA | M.HpyH390dORF7385P |
| 7390 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyCA8ORF7240P (95% identity) | M.HpyH390dORF40P | |
| 45 | R | HpyH390rORF40P (99% identity) | HpyH390dORF40P | |
| 50 | 714 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | HpyH390rORF650P (97% identity) | HpyH390dORF635P | |
| 635 | M | M.HpyH390rORF650P (100% identity) | M.HpyH390dORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 6905 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyH390rORF6910P (99% identity) | M.HpyH390dORF6910P | |
| 6920 | R | HpyH390rORF6910P (97% identity) | HpyH390dORF6910P | |
| 6925 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2955 | type I glutamate--ammonia ligase | |||
| 2960 | R | HpyH390rGmrSD2P (100% identity) | HpyH390dGmrSD2P | |
| 2965 | 50S ribosomal protein L9 | |||
| 3530 | tetratricopeptide repeat protein | |||
| 3535 | R | HpyH390rGmrSDP (100% identity) | HpyH390dGmrSDP | |
| 3540 | NAD(P)H-dependent oxidoreductase | |||