Escherichia coli DETEC-S589 |
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Putative Escherichia coli DETEC-S589 RM systems
Ref: Moran,R.A. et al. unpublished
REBASE ref # 36014
| Sequence length: | GenBank #: | |
| Chromosome: | 5,226,109 bp | CP116071 |
| plasmid pDETEC78: | 89,022 bp | CP116073 |
REBASE acronym: EcoS589
Org_num: 64523
All begin PIC30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21560 | adenine/cytosine-specific restriction | |||
| 21565 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoS589ORF21570P |
| 21570 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoS589ORF21570P |
| 21575 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoS589ORF21570P |
| 21580 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1725 | cell division protein DamX | |||
| 1730 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS589DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 family protein | |||
| 2330 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS589ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 5695 | PerC family transcriptional regulator | |||
| 5700 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoS589ORF5700P |
| 5705 | LexA family transcriptional regulator | |||
| 9970 | phosphohydrolase | |||
| 9975 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoS589DcmP |
| 9980 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoS589DcmP |
| 9985 | drug/metabolite exporter YedA | |||
| 13835 | 39 aa hypothetical protein | |||
| 13855 | M | M.SboBSORF1444P (100% identity) | A | M.EcoS589ORF13855P |
| 13860 | TrmB family transcriptional regulator | |||
| 21810 | HNH endonuclease | |||
| 21815 | R | Ecoi127aORF4076P (100% identity) | EcoS589ORF21815P | |
| 21820 | peptidase | |||
| 23830 | LexA family transcriptional regulator | |||
| 23835 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoS589ORF23835P |
| 23840 | PerC family transcriptional regulator | |||
| plasmid pDETEC78 | ||||
| 26640 | 103 aa hypothetical protein | |||
| 26645 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoS589ORF26645P | |
| 26650 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5890 | recombinase family protein | |||
| 5895 | R | EspFAAGmrSDP (100% identity) | EcoS589GmrSDP | |
| 5900 | DinI-like family protein | |||
| 21555 | GTPase | |||
| 21560 | R | EcosS1MrrP (100% identity) | EcoS589MrrP | |
| 21565 | type I restriction-modification system | |||
| 21580 | endoribonuclease SymE | |||
| 21585 | R | EcoUTGmrSD2P (52% identity) | EcoS589GmrD2P | |
| 21590 | R | EcoSW4848GmrSDAP (100% identity) | EcoS589GmrS2P | |
| 21595 | Rpn family recombination-promoting | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14715 | NinE family protein | |||
| 14720 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoS589ORF14720P |
| 14725 | recombination protein NinB | |||