Vibrio parahaemolyticus LH214 |
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Putative Vibrio parahaemolyticus LH214 RM systems
Ref: Fu,S. unpublished
REBASE ref # 33935
| Sequence length: | GenBank #: | |
| chromosome LH214_1: | 3,356,699 bp | CP085857 |
| chromosome LH214_2: | 1,870,469 bp | CP085858 |
REBASE acronym: Vpa2141
Org_num: 63994
All begin JK088_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome LH214_1 | ||||
| 3080 | restriction endonuclease | |||
| 3085 | M | M.VphS1ORFCP (100% identity) | TAAAYNNNNNNTCNNC | M.Vpa2141ORF3085P |
| 3090 | S | S.VphS1ORFCP (100% identity) | TAAAYNNNNNNTCNNC | S.Vpa2141ORF3085P |
| 3095 | DUF262 domain-containing protein | |||
| 3100 | DUF262 domain-containing HNH endonuclease family | |||
| 3105 | R | VphS1ORFCP (100% identity) | TAAAYNNNNNNTCNNC | Vpa2141ORF3085P |
| 3110 | M48 family metallopeptidase | |||
| 13335 | integrase | |||
| 13340 | M | M.Vhaf9ORF17810P (100% identity) | M.Vpa2141ORF13340P | |
| 13345 | AAA family ATPase | |||
| 13350 | S | S.Vhaf3ORFFP (54% identity) | S.Vpa2141ORF13340P | |
| 13355 | R | VspSS3ORF430P (99% identity) | Vpa2141ORF13340P | |
| 13360 | DUF2787 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome LH214_1 | ||||
| 8700 | 142 aa hypothetical protein | |||
| 8705 | R | Vvu61306ORF12920P (100% identity) | Vpa2141ORF8705P | |
| 8710 | DUF3265 domain-containing protein | |||
| 14475 | ribulose-phosphate 3-epimerase | |||
| 14480 | M | M.VphVPD14DamP (100% identity) | GATC | M.Vpa2141DamP |
| 14485 | AAA family ATPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome LH214_1 | ||||
| 3075 | helix-turn-helix domain-containing protein | |||
| 3080 | R | VphS1Mrr2P (100% identity) | Vpa2141MrrP | |
| 3085 | type I restriction-modification system subunit | |||
| 9605 | GFA family protein | |||
| 9610 | R | VphS1Mrr3P (98% identity) | Vpa2141Mrr2P | |
| 9615 | type II toxin-antitoxin system ParD family | |||
| chromosome LH214_2 | ||||
| 18415 | 298 aa hypothetical protein | |||
| 18420 | R | VvuV252ORF1955P (91% identity) | Vpa2141ORF18420P | |
| 18425 | (deoxy)nucleoside triphosphate | |||