Sphingobium species JS3065 |
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Putative Sphingobium species JS3065 RM systems
Ref: Li,T. et al. unpublished
REBASE ref # 35713
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,555,142 bp | CP102664 |
| plasmid pNIN3: | 148,600 bp | CP102668 |
REBASE acronym: Ssp3065
Org_num: 63466
All begin NUH86_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1630 | acyl carrier protein | |||
| 1635 | M | M.SheMHORFFP (74% identity) | M.Ssp3065ORF1635P | |
| 1640 | 302 aa hypothetical protein | |||
| 1660 | 68 aa hypothetical protein | |||
| 1665 | M | M.MspNC20ORFDP (51% identity) | M.Ssp3065ORF1665P | |
| 1670 | 145 aa hypothetical protein | |||
| 2045 | WYL domain-containing protein | |||
| 2050 | R | Dva114ORF12825P (13% identity) | Ssp3065ORF2070AP | |
| 2055 | IS630 family transposase | |||
| 2060 | R | OanPBOORF19650P (73% identity) | Ssp3065ORF2070BP | |
| 2065 | 148 aa hypothetical protein | |||
| 2070 | M | M.Pim1986ORFEP (16% identity) | M.Ssp3065ORF2070AP | |
| 2075 | M | M.Pim1986ORFEP (79% identity) | M.Ssp3065ORF2070BP | |
| 2080 | DUF499 domain-containing protein | |||
| 10525 | dihydropteroate synthase | |||
| 10530 | M | M.SspTKSORF16740P (97% identity) | M.Ssp3065ORF10530P | |
| 10535 | metalloregulator ArsR/SmtB family transcription | |||
| 10780 | phosphoadenosine phosphosulfate reductase family | |||
| 10785 | M | M.SspCam51ORF5385P (87% identity) | M.Ssp3065ORF10785P | |
| 10790 | 136 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pNIN3 | ||||
| 24435 | DUF4391 domain-containing protein | |||
| 24440 | M | M.PpuM1ORF14835P (35% identity) | M.Ssp3065ORF24440AP | |
| 24445 | IS1380-like element ISSp1 family transposase | |||
| 24450 | M | M.Eho42ORF5045P (21% identity) | M.Ssp3065ORF24440BP | |
| 24455 | IS1380-like element ISSp1 family transposase | |||
| 24460 | M | M.Sma203NORF14580P (21% identity) | M.Ssp3065ORF24440CP | |
| 24465 | 64 aa hypothetical protein | |||
| 24470 | IS5 family transposase | |||
| 24475 | R | SmiDMF3ORF10600P (89% identity) | Ssp3065ORF24440P | |
| 24480 | ISNCY family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 15345 | relaxase/mobilization nuclease domain-containing | |||
| 15350 | R | Ssp60837McrBP (92% identity) | Ssp3065McrBP | |
| 15355 | R | Ssp60837McrCP (96% identity) | Ssp3065McrCP | |
| 16815 | recombinase family protein | |||
| 16820 | R | Nsp12GmrSDP (70% identity) | Ssp3065GmrSDP | |
| 16825 | 122 aa hypothetical protein | |||