Helicobacter pylori oh1 |
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Putative Helicobacter pylori oh1 RM systems
Ref: Chelliah,R. unpublished
REBASE ref # 35676
Complete sequence: 1,600,023 bp
GenBank #: CP109885
REBASE acronym: Hpyoh1
Org_num: 63374
All begin OK340_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1960 | 84 aa hypothetical protein | |||
| 1965 | S | S.HpySS1DORF1358P (100% identity) | CNNTAYNNNNNTTTA | S.Hpyoh1ORF1965P |
| 1970 | formyltetrahydrofolate deformylase | |||
| 2475 | FAD-dependent thymidylate synthase | |||
| 2480 | S | S.HpySS1DORFAP (100% identity) | GRTANNNNNNNTG | S.Hpyoh1ORF2485P |
| 2485 | M | M.HpySS1DORFAP (100% identity) | GRTANNNNNNNTG | M.Hpyoh1ORF2485P |
| 2490 | R | HpySS1DORFAP (100% identity) | GRTANNNNNNNTG | Hpyoh1ORF2485P |
| 2495 | M48 family metallopeptidase | |||
| 4960 | RNA degradosome polyphosphate kinase | |||
| 4970 | S | S.HpySS1DORF424P (100% identity) | CAGNNNNNTC | S.Hpyoh1ORF4975P |
| 4975 | M | M.HpySS1DORF424P (100% identity) | CAGNNNNNTC | M.Hpyoh1ORF4975P |
| ??? | R | HpySS1DORF424P (100% identity) | CAGNNNNNTC | Hpyoh1ORF4975P |
| 4990 | motility associated factor glycosyltransferase | |||
| 5265 | DNA cytosine methyltransferase | |||
| 5270 | M | M.HpySS1DORF484AP (97% identity) | M.Hpyoh1ORF5270AP | |
| 5275 | IS607-like element IS607 family transposase | |||
| 5280 | transposase | |||
| 5285 | M | M.HpySS1DORF484BP (86% identity) | M.Hpyoh1ORF5270BP | |
| 5290 | S | S.HpySS1DORF484P (100% identity) | S.Hpyoh1ORF5270P | |
| 5295 | R | HpySS1DORF484P (100% identity) | Hpyoh1ORF5270P | |
| 5300 | hydroxyethylthiazole kinase | |||
| 5585 | CAAX protease | |||
| 5590 | S | S.HpySS1DORF545P (100% identity) | GRTANNNNNNNTG | S.Hpyoh1ORF5590P |
| 5595 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 380 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 385 | R | HpySS1DORF695P (94% identity) | GTAC | Hpyoh1ORF390P |
| 390 | M | M.HpySS1DORF695P (95% identity) | GTAC | M.Hpyoh1ORF390P |
| 395 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 485 | 144 aa hypothetical protein | |||
| 490 | R | HpySS1DORF1065P (100% identity) | GCGC | Hpyoh1ORF495P |
| 495 | M | M.HpySS1DORF1065P (100% identity) | GCGC | M.Hpyoh1ORF495P |
| 500 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 950 | HAD family hydrolase | |||
| 955 | M | M.HpySS1DORF1159P (93% identity) | CATG | M.Hpyoh1ORF955P |
| 960 | IceA2 protein | |||
| 1660 | DNA methyltransferase | |||
| 1665 | R | HpySS1DORF1300P (100% identity) | GANTC | Hpyoh1ORF1670P |
| 1670 | M | M.HpySS1DORF1300P (100% identity) | GANTC | M.Hpyoh1ORF1670P |
| 1675 | N-6 DNA methylase | |||
| 1670 | DNA methyltransferase | |||
| 1675 | RM | HpyPMSS1ORF1301P (100% identity) | Hpyoh1ORF1675P | |
| 1680 | carboxylating nicotinate-nucleotide | |||
| 2155 | DNA polymerase I | |||
| 2160 | S | S.HpySS1DORF1398P (100% identity) | S.Hpyoh1ORF2165P | |
| 2165 | RM | HpySS1DORF1398P (100% identity) | CYANNNNNNNTGA | Hpyoh1ORF2165P |
| 2170 | ComF family protein | |||
| 2295 | LptF/LptG family permease | |||
| 2300 | M | M1.HpySS1DORF1425P (100% identity) | CCATC | M1.Hpyoh1ORF2300P |
| 2305 | M | M2.HpySS1DORF1425P (100% identity) | CCATC | M2.Hpyoh1ORF2300P |
| 2310 | R | HpySS1DORF1425P (100% identity) | CCATC | Hpyoh1ORF2300P |
| 2315 | outer membrane protein | |||
| 2395 | 179 aa hypothetical protein | |||
| 2400 | RM | HpySS1DORF1445P (100% identity) | Hpyoh1ORF2400P | |
| 2405 | 714 aa hypothetical protein | |||
| 2570 | 67 aa hypothetical protein | |||
| 2575 | M | M.HpySS1DORF1480P (100% identity) | TGCA | M.Hpyoh1ORF2575P |
| 2580 | R | HpySS1DORF1480P (100% identity) | TGCA | Hpyoh1ORF2575P |
| 2585 | cytochrome c1 | |||
| 3105 | agmatine/peptidylarginine deiminase | |||
| 3110 | M | M1.HpySS1DORF50P (100% identity) | CCTC | M1.Hpyoh1ORF3110P |
| 3115 | M | M2.Hpy2ALORF2515P (96% identity) | M2.Hpyoh1ORF3110P | |
| 3120 | sodium/proline symporter PutP | |||
| 3285 | ACP S-malonyltransferase | |||
| 3295 | R | HpySS1DORF88P (100% identity) | GATC | Hpyoh1ORF3300P |
| 3300 | M | M.HpySS1DORF88P (100% identity) | GATC | M.Hpyoh1ORF3300P |
| 3305 | alpha-1,2-fucosyltransferase | |||
| 4110 | exodeoxyribonuclease VII large subunit | |||
| 4115 | M | M1.HpySS1DORF249P (98% identity) | TCGA | M.Hpyoh1ORF4115P |
| 4120 | 204 aa hypothetical protein | |||
| 4120 | 204 aa hypothetical protein | |||
| 4125 | R | HpyAMORF2910P (100% identity) | CCGG | Hpyoh1ORF4130P |
| 4130 | M | M2.HpySS1DORF249P (100% identity) | CCGG | M.Hpyoh1ORF4130P |
| 4135 | AAA family ATPase | |||
| 4530 | translation elongation factor 4 | |||
| 4535 | M | M.Hpyfe96ORF5390P (100% identity) | GCNGC | M.Hpyoh1ORF4535P |
| 4540 | group I intron-associated PD-(D/E)XK | |||
| 5055 | Hop family outer membrane protein HopJ/HopK | |||
| 5060 | M | M.HpySS1DORF440P (100% identity) | ATTAAT | M.Hpyoh1ORF5060P |
| 5065 | glycosyltransferase family 9 protein | |||
| 5070 | translational GTPase TypA | |||
| 5075 | M | M.HpySS1DORF443P (100% identity) | ACNGT | M.Hpyoh1ORF5075P |
| 5080 | R | HpySS1DORF443P (100% identity) | ACNGT | Hpyoh1ORF5075P |
| 5085 | DNA cytosine methyltransferase | |||
| 5080 | GIY-YIG nuclease family protein | |||
| 5085 | M | M.HpySS1DORF445P (100% identity) | ACGT | M.Hpyoh1ORF5085P |
| 5090 | R | HpySS1DORF445P (100% identity) | ACGT | Hpyoh1ORF5085P |
| 5095 | catalase | |||
| 5255 | phosphatase PAP2 family protein | |||
| 5260 | R | HpyAMORF5590P (100% identity) | GGCC | Hpyoh1ORF5265P |
| 5265 | M | M.HpySS1DORF483P (100% identity) | GGCC | M.Hpyoh1ORF5265P |
| 5270 | type I restriction-modification system subunit | |||
| 6105 | ATP-dependent helicase | |||
| 6110 | M | M.HpyAMORF7530P (100% identity) | GTNNAC | M.Hpyoh1ORF6110P |
| 6115 | R | HpySS1DORF649P (100% identity) | GTNNAC | Hpyoh1ORF6110P |
| 6120 | flagellar hook protein FlgE | |||
| 6420 | Laminin subunit alpha-2 precursor | |||
| 6425 | R | HpySS1DORF1025P (100% identity) | TCNNGA | Hpyoh1ORF6430P |
| 6430 | M | M.HpySS1DORF1025P (100% identity) | TCNNGA | M.Hpyoh1ORF6430P |
| 6435 | acetyl-CoA carboxylase biotin carboxylase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1730 | copper response regulator transcription factor | |||
| 1735 | M | M.HpyPMSS1ORF1313P (100% identity) | M.Hpyoh1ORF1735P | |
| 1740 | R | HpySS1DORF1313P (100% identity) | Hpyoh1ORF1735P | |
| 1745 | rod shape-determining protein MreC | |||
| 1795 | DNA/RNA non-specific endonuclease | |||
| 1800 | M | M.HpySS1DORF1326P (100% identity) | M.Hpyoh1ORF1800P | |
| 1805 | R | HpyPMSS1ORF1326P (99% identity) | Hpyoh1ORF1800P | |
| 1810 | type III restriction endonuclease subunit R | |||
| 2405 | 714 aa hypothetical protein | |||
| 2410 | R | HpySS1DORF1448P (100% identity) | Hpyoh1ORF2415P | |
| ??? | M | M.HpyPMSS1ORF1448P (100% identity) | M.Hpyoh1ORF2415P | |
| 2425 | ATP-dependent DNA helicase RecG | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7375 | NAD(P)H-dependent oxidoreductase | |||
| 7380 | R | HpyAMGmrSD2P (100% identity) | Hpyoh1GmrSDP | |
| 7385 | sel1 repeat family protein | |||