Neisseria gonorrhoeae 9112 |
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Putative Neisseria gonorrhoeae 9112 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,230,440 bp
GenBank #: CP107266
REBASE acronym: Ngo9112
Org_num: 63079
All begin NDN54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5205 | ABC transporter | |||
| 5210 | M | M.NgoWSI (100% identity) | GAGNNNNNTAC | M.Ngo9112ORF5210P |
| 5215 | 279 aa hypothetical protein | |||
| 5220 | 186 aa hypothetical protein | |||
| 5225 | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.Ngo9112ORF5210P |
| 5230 | hydroxyacid dehydrogenase | |||
| 5235 | R | NgoWPIP (99% identity) | GAGNNNNNTAC | Ngo9112ORF5210P |
| 5240 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo9112ORF35P |
| 40 | site-specific DNA-methyltransferase | |||
| 35 | restriction endonuclease | |||
| 40 | M | M.NgoWPORF8P (93% identity) | GATC | M.Ngo9112ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1225 | 62 aa hypothetical protein | |||
| 1230 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo9112ORF1230P |
| 1235 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo9112ORF1230P |
| 1240 | excinuclease ABC subunit UvrA | |||
| 1850 | phenylalanine--tRNA ligase subunit alpha | |||
| 1855 | V | V.NgoWSORF391P (100% identity) | V.Ngo9112ORF1860P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo9112ORF1860P |
| 1870 | R | NgoWSORF391P (100% identity) | CCGG | Ngo9112ORF1860P |
| 1875 | phenylalanine--tRNA ligase subunit beta | |||
| 2155 | IS1595 family transposase | |||
| 2160 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo9112ORF2160P |
| 2165 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo9112ORF2160P |
| 2170 | 140 aa hypothetical protein | |||
| 2190 | uroporphyrinogen decarboxylase | |||
| 2195 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo9112ORF2205P | |
| 2200 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo9112ORF2205P |
| 2205 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo9112ORF2205P |
| 2210 | DNA repair protein RadA | |||
| 4020 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 4025 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo9112ORF4030P |
| 4030 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo9112ORF4030P |
| 4035 | anthranilate synthase component I | |||
| 5345 | 3-isopropylmalate dehydratase small subunit | |||
| 5350 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo9112ORF5350P |
| 5355 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo9112ORF5350P |
| 5360 | 3-isopropylmalate dehydrogenase | |||
| 8490 | replication initiation factor domain-containing | |||
| 8495 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo9112ORF8510P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo9112ORF8510P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo9112ORF8510P |
| 8520 | 48 aa hypothetical protein | |||
| 9845 | cysteine--tRNA ligase | |||
| 9850 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo9112ORF9855P |
| 9855 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo9112ORF9855P |
| 9860 | GTPase ObgE | |||
| 10380 | RNA-binding transcriptional accessory protein | |||
| 10385 | M | M1.NgoWSIII (100% identity) | GGTGA | M1.Ngo9112ORF10385P |
| 10390 | M | M1.Ngos1291II (100% identity) | GGTGA | M2.Ngo9112ORF10385P |
| 10395 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo9112ORF10385P |
| 10400 | 93 aa hypothetical protein | |||
| 10975 | ribosome recycling factor | |||
| 10980 | M | M.Ngo9071ORF10080P (100% identity) | GGCC | M.Ngo9112ORF10980P |
| 10985 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo9112ORF10980P |
| 10990 | FUSC family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5530 | tRNA pseudouridine(55) synthase TruB | |||
| 5535 | M | M.Ngo34530ORF5855P (100% identity) | GCAGA | M.Ngo9112ORF5535P |
| 5540 | R | NgoNCORF1272P (100% identity) | GCAGA | Ngo9112ORF5535P |
| 5545 | alpha-hydroxy-acid oxidizing protein | |||
| 5995 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 6000 | R | NgoWPIIP (100% identity) | Ngo9112ORF6005P | |
| 6005 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo9112ORF6005P | |
| 6010 | peptidylprolyl isomerase | |||