Streptococcus suis TRG6 |
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Putative Streptococcus suis TRG6 RM systems
Ref: Kerdsin,A. et al. unpublished
REBASE ref # 35634
Complete sequence: 2,292,430 bp
GenBank #: CP109937
REBASE acronym: SsuTRG6
Org_num: 63212
All begin OHM52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2780 | site-specific integrase | |||
| 2785 | S | S2.SsuWTORFDP (95% identity) | S4.SsuTRG6ORF2810P | |
| 2790 | R | SsuYB51ORFAP (100% identity) | SsuTRG6ORF2810P | |
| 2795 | S | S3.SsuS11ORF2685P (99% identity) | S3.SsuTRG6ORF2810P | |
| 2800 | S | S2.SsuYB51ORFAP (100% identity) | S2.SsuTRG6ORF2810P | |
| 2805 | S | S.SsuiS10ORFAP (44% identity) | S1.SsuTRG6ORF2810P | |
| 2810 | M | M.SsuTANI1ORF1593P (99% identity) | M.SsuTRG6ORF2810P | |
| 2815 | serine--tRNA ligase | |||
| 4400 | tRNA uridine-5-carboxymethylaminomethyl(34) | |||
| 4405 | R | Ssu36054ORF6035P (100% identity) | SsuTRG6ORF4410P | |
| 4410 | M | M.SsuTANI1ORF578P (100% identity) | M.SsuTRG6ORF4410P | |
| 4415 | S | S1.SsuGX69ORF7625P (99% identity) | S1.SsuTRG6ORF4410P | |
| 4420 | S | S3.Ssu36054ORF6035P (100% identity) | S2.SsuTRG6ORF4410P | |
| 4425 | ribose-5-phosphate isomerase RpiA | |||
| 8805 | AAA family ATPase | |||
| ??? | S | S.SsuS11ORF8270P (100% identity) | S.SsuTRG6ORF8820P | |
| 8820 | M | M.SsuTANI1ORF1889P (98% identity) | M.SsuTRG6ORF8820P | |
| 8825 | R | SsuTANI1ORF1889P (100% identity) | SsuTRG6ORF8820P | |
| 8830 | FAD-containing oxidoreductase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | bifunctional | |||
| 255 | M | M1.SsuYB51ORFBP (100% identity) | GATC | M1.SsuTRG6ORF255P |
| 260 | M | M2.SsuYB51ORFBP (100% identity) | GATC | M2.SsuTRG6ORF255P |
| 265 | R | R1.SsuYB51ORFBP (100% identity) | GATC | R1.SsuTRG6ORF255P |
| 270 | R | R2.SsuYB51ORFBP (100% identity) | GATC | R2.SsuTRG6ORF255P |
| 275 | phosphoribosylamine--glycine ligase | |||
| 5175 | 142 aa hypothetical protein | |||
| 5180 | M | M.SsuTRG6ORF9505P (100% identity) | M.SsuTRG6ORF5180P | |
| 5185 | replication initiator protein A | |||
| 5420 | 150 aa hypothetical protein | |||
| 5425 | M | M.SsuGX69ORF3500P (99% identity) | M.SsuTRG6ORF5425P | |
| 5430 | DNA (cytosine-5-)-methyltransferase | |||
| 5425 | DNA (cytosine-5-)-methyltransferase | |||
| 5430 | M | M2.SsuTANI1ORF655P (100% identity) | M.SsuTRG6ORF5430P | |
| 5435 | 74 aa hypothetical protein | |||
| 9500 | 142 aa hypothetical protein | |||
| 9505 | M | M.SsuTRG6ORF5180P (100% identity) | M.SsuTRG6ORF9505P | |
| 9510 | replication initiator protein A | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8865 | IS200/IS605 family transposase | |||
| 8870 | R | SsuTANI1ORF1900P (100% identity) | SsuTRG6ORF8875P | |
| ??? | M | M.SsuSs08ORF1750P (94% identity) | M.SsuTRG6ORF8875P | |
| 8880 | DUF3885 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4765 | 262 aa hypothetical protein | |||
| 4770 | R | SsuTANI1McrBP (100% identity) | SsuTRG6McrBP | |
| 4775 | R | SsuST3McrCP (100% identity) | SsuTRG6McrCP | |
| 4780 | glutamine-hydrolyzing GMP synthase | |||