Phocaeicola dorei DH3716Y |
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Putative Phocaeicola dorei DH3716Y RM systems
Ref: Campbell,D.E. et al. unpublished
REBASE ref # 35521
Complete sequence: 5,301,996 bp
GenBank #: CP083689
REBASE acronym: Pdo3716Y
Org_num: 63091
All begin KQP62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4060 | S1 RNA-binding domain-containing protein | |||
| 4065 | R | Pjo12C29ORF2944P (100% identity) | Pdo3716YORF4070P | |
| 4070 | M | M.Pjo12C29ORF2944P (99% identity) | M.Pdo3716YORF4070P | |
| 4075 | C | C.Pjo12C29ORF2943P (100% identity) | C.Pdo3716YORF4070P | |
| 4080 | DUF2958 domain-containing protein | |||
| 6355 | S-adenosylmethionine:tRNA | |||
| 6360 | M | M.Pdo2ORF20950P (100% identity) | M.Pdo3716YORF6360P | |
| 6365 | S | S1.Pdo1048II (100% identity) | RAACNNNNNNRTTG | S1.Pdo3716YORF6360P |
| 6370 | S | S2.PmeBin22ORFCP (100% identity) | S2.Pdo3716YORF6360P | |
| 6375 | DEAD/DEAH box helicase family protein | |||
| 6380 | IS1595-like element ISBvu2 family transposase | |||
| 6385 | 51 aa hypothetical protein | |||
| 6390 | 180 aa hypothetical protein | |||
| 6395 | 74 aa hypothetical protein | |||
| 6400 | R | Pdo17855ORF1705P (74% identity) | Pdo3716YORF6360P | |
| 6405 | WYL domain-containing protein | |||
| 13085 | GIY-YIG nuclease family protein | |||
| 13090 | C | C.Pvu201ORF22395P (100% identity) | C.Pdo3716YORF13100P | |
| 13095 | R | Pdo1048IP (100% identity) | Pdo3716YORF13100P | |
| 13100 | M | M.Pdo1048I (100% identity) | M.Pdo3716YORF13100P | |
| 13105 | S | S1.Pdo17855ORF22875P (100% identity) | S1.Pdo3716YORF13100P | |
| 13110 | S | S2.Pdo1048I (100% identity) | GAAGNNNNNNNTRRG | S2.Pdo3716YORF13100P |
| 13115 | tyrosine-type recombinase/integrase | |||
| ??? | S | S3.Pdo1051IP (100% identity) | S3.Pdo3716YORF13100P | |
| 13120 | S | S3.Pdo3C03ORF2038P (100% identity) | S4.Pdo3716YORF13100P | |
| 13125 | fimbrillin family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10660 | linear amide C-N hydrolase | |||
| 10665 | R | Pdo3C03ORF1868P (100% identity) | Pdo3716YORF10665P | |
| 10670 | alpha-amylase family protein | |||
| 10785 | glycosyltransferase family 2 protein | |||
| 10790 | C | C.Bun3537ORF7730P (98% identity) | C.Pdo3716YORF10795P | |
| 10795 | M | M.Pdo1048ORF7300P (100% identity) | M.Pdo3716YORF10795P | |
| 10800 | Bro-N domain-containing protein | |||
| 10805 | R | Pdo1048ORF7300P (100% identity) | Pdo3716YORF10795P | |
| 10810 | site-specific integrase | |||
| 11835 | LlaJI family restriction endonuclease | |||
| 11840 | R | PmeBin22ORFAP (99% identity) | Pdo3716YORF11845P | |
| 11845 | M | M.PmeBin22ORFAP (99% identity) | M.Pdo3716YORF11845P | |
| 11850 | C | C.PmeBin22ORFAP (95% identity) | C.Pdo3716YORF11845P | |
| 11855 | plasmid recombination protein | |||
| 14925 | mobilization protein | |||
| 14930 | H | H.BfrFAAORFEP (100% identity) | H.Pdo3716YORF14940P | |
| 14935 | R | BfrFAAORFEP (100% identity) | Pdo3716YORF14940P | |
| 14940 | M | M.BfrFAAORFEP (100% identity) | M.Pdo3716YORF14940P | |
| 14945 | outer membrane beta-barrel protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19265 | DUF4391 domain-containing protein | |||
| 19270 | M | M.AspA01ORF11345AP (34% identity) | M.Pdo3716YORF19270P | |
| 19275 | R | AmuYL44ORF10955P (84% identity) | Pdo3716YORF19270P | |
| 19280 | 905 aa hypothetical protein | |||