Rhodococcus species Z13 |
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Putative Rhodococcus species Z13 RM systems
Ref: Long,X. and Zang,M. unpublished
REBASE ref # 35605
Complete sequence: 4,532,339 bp
GenBank #: CP107551
REBASE acronym: RspZ13
Org_num: 63158
All begin OED52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19250 | CD225/dispanin family protein | |||
| 19255 | R | Rrh10210ORF4534P (88% identity) | RspZ13ORF19310P | |
| 19260 | DUF4352 domain-containing protein | |||
| 19265 | DUF2510 domain-containing protein | |||
| 19270 | DinB family protein | |||
| 19275 | YdcF family protein | |||
| 19280 | RNA polymerase sigma-70 factor | |||
| 19285 | FAD-dependent oxidoreductase | |||
| 19290 | PASTA domain-containing protein | |||
| 19295 | XRE family transcriptional regulator | |||
| 19300 | S | S.Ncy6504I (53% identity) | S.RspZ13ORF19310P | |
| 19305 | IS5 family transposase | |||
| 19310 | M | M.Rco10994ORF1938P (67% identity) | M.RspZ13ORF19310BP | |
| ??? | M | M.RspP14ORFCP (17% identity) | M.RspZ13ORF19310AP | |
| 19320 | 301 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6540 | HNH endonuclease | |||
| 6545 | M | M.RruSD3DndAP (87% identity) | M.RspZ13DndAP | |
| 6550 | DNA sulfur modification protein DndB | |||
| 6545 | cysteine desulfurase DndA | |||
| 6550 | M | M.RruSD3DndBP (87% identity) | M.RspZ13DndBP | |
| 6555 | DNA phosphorothioation system sulfurtransferase | |||
| 6550 | DNA sulfur modification protein DndB | |||
| 6555 | M | M.RspRDE2DndCP (96% identity) | M.RspZ13DndCP | |
| 6560 | DNA sulfur modification protein DndD | |||
| 6555 | DNA phosphorothioation system sulfurtransferase | |||
| 6560 | M | M.RruSD3DndDP (88% identity) | M.RspZ13DndDP | |
| 6565 | DNA sulfur modification protein DndE | |||
| 6560 | DNA sulfur modification protein DndD | |||
| 6565 | M | M.RruSD3DndEP (91% identity) | M.RspZ13DndEP | |
| 6570 | DNA phosphorothioation-associated putative | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5625 | carotenoid oxygenase family protein | |||
| 5630 | R | RspPD04MrrP (91% identity) | RspZ13MrrP | |
| 5635 | DUF1906 domain-containing protein | |||