Neisseria gonorrhoeae 10239 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Neisseria gonorrhoeae 10239 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,223,679 bp
GenBank #: CP098474
REBASE acronym: Ngo10239
Org_num: 62738
All begin NC847_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2075 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2080 | M | M.Ngos1291ORF7750P (99% identity) | M.Ngo10239ORF2080P | |
| 2085 | DNA damage-inducible protein D | |||
| 2090 | S | S2.NgoJH5ORFRP (100% identity) | GCANNNNNNNNTGC | S1.Ngo10239ORF2080P |
| 2095 | S | S2.Ngo9431ORF2090P (100% identity) | GCANNNNNNNNTGC | S2.Ngo10239ORF2080P |
| 2100 | R | NgoN160ORF2075P (100% identity) | Ngo10239ORF2080P | |
| 2105 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4830 | ABC transporter | |||
| 4835 | M | M.Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | M.Ngo10239ORF4835P |
| 4840 | 280 aa hypothetical protein | |||
| 4845 | 186 aa hypothetical protein | |||
| 4850 | S | S.Ngo9458ORF4865P (100% identity) | GAGNNNNNTAC | S.Ngo10239ORF4835P |
| 4855 | hydroxyacid dehydrogenase | |||
| 4860 | R | Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | Ngo10239ORF4835P |
| 4865 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | M | M1.Ngo9464ORF35P (100% identity) | GATC | M1.Ngo10239ORF35P |
| 40 | M | M2.Ngo9464ORF35P (100% identity) | GATC | M2.Ngo10239ORF35P |
| 45 | 184 aa hypothetical protein | |||
| 1550 | phenylalanine--tRNA ligase subunit alpha | |||
| 1555 | V | V.NgoWSORF391P (100% identity) | V.Ngo10239ORF1560P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo10239ORF1560P |
| 1570 | R | NgoWSORF391P (100% identity) | CCGG | Ngo10239ORF1560P |
| 1575 | phenylalanine--tRNA ligase subunit beta | |||
| 1845 | N-6 DNA methylase | |||
| 1850 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo10239ORF1850P |
| 1855 | 140 aa hypothetical protein | |||
| 1875 | uroporphyrinogen decarboxylase | |||
| 1880 | H | H.Ngos1291ORF7560P (99% identity) | H.Ngo10239ORF1890P | |
| 1885 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo10239ORF1890P |
| 1890 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo10239ORF1890P |
| 1895 | DNA repair protein RadA | |||
| 3640 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3645 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo10239ORF3650P |
| 3650 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo10239ORF3650P |
| 3655 | anthranilate synthase component I | |||
| 4960 | 3-isopropylmalate dehydratase small subunit | |||
| 4965 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo10239ORF4965P |
| 4970 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo10239ORF4965P |
| 4975 | 3-isopropylmalate dehydrogenase | |||
| 6120 | replication initiation factor domain-containing | |||
| 6125 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo10239ORF6140P | |
| 6130 | TIGR02391 family protein | |||
| 6135 | R | Ngo10819ORF6195AP (100% identity) | CCGG | Ngo10239ORF6140P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo10239ORF6140P |
| 6150 | 48 aa hypothetical protein | |||
| 6340 | excinuclease ABC subunit UvrA | |||
| 6345 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo10239ORF6350P |
| 6350 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo10239ORF6350P |
| 6355 | 62 aa hypothetical protein | |||
| 9730 | cysteine--tRNA ligase | |||
| 9735 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo10239ORF9740P |
| 9740 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo10239ORF9740P |
| 9745 | GTPase ObgE | |||
| 10280 | RNA-binding transcriptional accessory protein | |||
| 10285 | M | M2.Ngos1291II (100% identity) | GGTGA | M1.Ngo10239ORF10285P |
| 10290 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M2.Ngo10239ORF10285P |
| 10295 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo10239ORF10285P |
| 10300 | 93 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5145 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo1168ORF5750P (99% identity) | M.Ngo10239ORF5150P | |
| 5165 | R | Ngo9464ORF5170P (100% identity) | Ngo10239ORF5150P | |
| 5170 | alpha-hydroxy-acid oxidizing protein | |||
| 5620 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5625 | R | Ngos1291ORF8455P (100% identity) | CCACC | Ngo10239ORF5630P |
| 5630 | M | M.NgoSH240ORFNP (100% identity) | CCACC | M.Ngo10239ORF5630P |
| 5635 | peptidylprolyl isomerase | |||