Helicobacter pylori CHC155 |
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Putative Helicobacter pylori CHC155 RM systems
Ref: Phuc,B.H. et al. Gut Pathog (2022) In press
REBASE ref # 35476
Complete sequence: 1,696,601 bp
GenBank #: AP026446
REBASE acronym: Hpy155
Org_num: 62720
All begin CHC155_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5320 | Polyphosphate kinase Ppk | |||
| 5330 | S | S.HpyMM01ORF2115P (97% identity) | GCANNNNNNTAA | S.Hpy155ORF5340P |
| 5340 | M | M.Hpy1291ORF5360P (99% identity) | GCANNNNNNTAA | M.Hpy155ORF5340P |
| 5350 | R | Hpyfe72ORF4875P (94% identity) | GCANNNNNNTAA | Hpy155ORF5340P |
| 5360 | PH domain-containing protein | |||
| 8870 | Outer membrane protein HofF | |||
| 8880 | S | S.HpySG32XV (95% identity) | GAANNNNNNNTRG | S.Hpy155ORF8880P |
| 8890 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 9470 | Hydroxyethylthiazole kinase ThiM | |||
| 9480 | R | HpyTW01XIIP (95% identity) | CTANNNNNNNTTC | Hpy155ORF9500P |
| 9490 | S | S.HpySG18V (97% identity) | CTANNNNNNNTTC | S.Hpy155ORF9500P |
| 9500 | M | M.Hpyfe15ORF3000P (95% identity) | CTANNNNNNNTTC | M.Hpy155ORF9500P |
| 9510 | Integral membrane protein | |||
| 15740 | 362 aa hypothetical protein | |||
| 15750 | M | M.Hpy1291ORF15940P (100% identity) | M.Hpy155ORF15750P | |
| 15760 | S | S.Hpy1291ORF15940P (50% identity) | S.Hpy155ORF15750P | |
| 15770 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 560 | Amidophosphoribosyltransferase | |||
| 570 | RM | HpyF005ORF6980P (99% identity) | CYANNNNNNTGA | Hpy155ORF570P |
| 580 | S | S.HpyCOL121ORF7195P (96% identity) | CYANNNNNNTTC | S.Hpy155ORF570P |
| 590 | DNA polymerase I PolA | |||
| 1460 | Agmatine deiminase | |||
| 1470 | M | M1.Hpy1291ORF1470P (99% identity) | CCTC | M1.Hpy155ORF1470P |
| 1480 | M | M2.Hpy1291ORF1470P (100% identity) | CCTC | M2.Hpy155ORF1470P |
| 1490 | R | Hpy1291ORF1470P (100% identity) | CCTC | Hpy155ORF1470P |
| 1500 | type II DNA modification enzyme | |||
| 1490 | Restriction endonuclease | |||
| 1500 | M | M.Hpy1291ORF1500P (100% identity) | GTSAC | M.Hpy155ORF1500P |
| 1510 | R | Hpy1291ORF1500P (100% identity) | GTSAC | Hpy155ORF1500P |
| 1520 | 78 aa hypothetical protein | |||
| 1920 | Malonyl CoA-acyl carrier protein transacylase | |||
| 1930 | R | Hpyfe78ORF6785P (96% identity) | GATC | Hpy155ORF1940P |
| 1940 | M | M.HpyTW07XI (98% identity) | GATC | M.Hpy155ORF1940P |
| 1950 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2040 | Glycosyl transferase | |||
| 2050 | R | Hpyfe81ORF1020P (100% identity) | Hpy155ORF2060P | |
| 2060 | M | M.Hpy1291ORF2060P (100% identity) | M.Hpy155ORF2060P | |
| 2070 | Methyl-accepting chemotaxis protein TlpB | |||
| 3570 | Exodeoxyribonuclease VII large subunit XseA | |||
| 3580 | M | M.HpyGU1CORF2850P (100% identity) | TCGA | M.Hpy155ORF3580P |
| 3590 | 148 aa hypothetical protein | |||
| 3590 | 148 aa hypothetical protein | |||
| 3600 | R | Hpy1291ORF3630P (100% identity) | CCGG | Hpy155ORF3610P |
| 3610 | M | M.Hpy1291ORF3630P (100% identity) | CCGG | M.Hpy155ORF3610P |
| 3620 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 4090 | Cyclic imide hydrolase | |||
| 4100 | R | Hpy1291ORF4130P (100% identity) | CTNAG | Hpy155ORF4110P |
| 4110 | M | M.HpyBS22ORF5765P (100% identity) | CTNAG | M.Hpy155ORF4110P |
| 4120 | 128 aa hypothetical protein | |||
| 5500 | Outer membrane protein | |||
| 5510 | M | M.Hpy1291ORF5540P (98% identity) | ATTAAT | M.Hpy155ORF5510P |
| 5520 | Non-functional type II restriction endonuclease | |||
| 5530 | GTP-binding protein TypA | |||
| 5540 | M | M.Hpy1291ORF5570P (100% identity) | ACNGT | M.Hpy155ORF5540P |
| 5550 | R | Hpyfe93ORF4895P (100% identity) | ACNGT | Hpy155ORF5540P |
| 5560 | Cytosine-specific methyltransferase | |||
| 5550 | Type II restriction endonuclease | |||
| 5560 | M | M.Hpy1291ORF5590P (100% identity) | ACGT | M.Hpy155ORF5560P |
| ??? | R | Hpy1291ORF5590P (99% identity) | ACGT | Hpy155ORF5560P |
| 5590 | Catalase-like protein | |||
| 7790 | Outer membrane protein | |||
| 7800 | RM | HpyMM12ORF3155P (5% identity) | Hpy155ORF7800BP | |
| 7810 | RM | Hpy1291ORF7820AP (98% identity) | Hpy155ORF7800AP | |
| 7820 | Anaerobic glycerol-3-phosphate dehydrogenase | |||
| 9170 | 58 aa hypothetical protein | |||
| 9180 | R | HpyV001IVP (100% identity) | CGWCG | Hpy155ORF9190P |
| 9190 | M | M.Hpy1291ORF9170P (100% identity) | CGWCG | M.Hpy155ORF9190P |
| 9200 | Osmoprotection protein ProWX | |||
| 9990 | Flagellar hook protein FlgE | |||
| 10000 | R | HpyFD577ORFUP (96% identity) | GTNNAC | Hpy155ORF10010P |
| 10010 | M | M.Hpyfe65ORF2715P (98% identity) | GTNNAC | M.Hpy155ORF10010P |
| 10020 | DNA helicase | |||
| 11240 | 67 aa Hypothetical protein | |||
| 11250 | M | M.Hpyfe64ORF7605P (99% identity) | TGCA | M.Hpy155ORF11250P |
| 11260 | R | HpyV004XIIIP (98% identity) | TGCA | Hpy155ORF11250P |
| 11270 | 145 aa hypothetical protein | |||
| 12100 | 285 aa hypothetical protein | |||
| 12110 | R | Hpy1291ORF14490P (100% identity) | Hpy155ORF12110P | |
| 12120 | OmpR family DNA-binding response regulator | |||
| 12220 | Nicotinate-nucleotide pyrophosphorylase NadC | |||
| 12230 | RM | Hpy458ORFOP (70% identity) | Hpy155ORF12230P | |
| 12240 | 204 aa hypothetical protein | |||
| 12240 | 204 aa hypothetical protein | |||
| 12250 | M | M.HpyV007VI (99% identity) | GANTC | M.Hpy155ORF12250P |
| 12260 | R | HpyK93ORF7050P (96% identity) | GANTC | Hpy155ORF12250P |
| 12270 | Carboxyl-terminal protease Prc | |||
| 13620 | 50 aa hypothetical protein | |||
| 13630 | M | M.Hpy1291ORF12940P (100% identity) | CATG | M.Hpy155ORF13630P |
| 13640 | Haloacid dehalogenase | |||
| 14470 | FlgM protein | |||
| 14480 | M | M.Hpyfe83ORF1845P (97% identity) | GCGC | M.Hpy155ORF14480P |
| 14490 | flagellar protein FlgN | |||
| 14790 | Laminin subunit alpha-2 | |||
| ??? | R | Hpy1291ORF11760P (100% identity) | TCNNGA | Hpy155ORF14820P |
| 14820 | M | M.Hpy1291ORF11760P (99% identity) | TCNNGA | M.Hpy155ORF14820P |
| 14830 | Biotin carboxylase AccC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy1291ORF70P (98% identity) | M.Hpy155ORF70P | |
| 90 | R | Hpy1291ORF70P (97% identity) | Hpy155ORF70P | |
| 100 | 1181 aa hypothetical protein | |||
| 1210 | Biotin synthase BioB | |||
| 1220 | R | Hpy1291ORF1240P (100% identity) | TCAG | Hpy155ORF1230P |
| 1230 | M | M.HpySWT11XV (95% identity) | TCAG | M.Hpy155ORF1230P |
| 1240 | endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6970 | sel1 repeat family protein | |||
| 6980 | R | Hpyfe39GmrSDP (95% identity) | Hpy155GmrSDP | |
| 6990 | Modulator of drug activity | |||