Helicobacter pylori VN1291 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori VN1291 RM systems
Ref: Phuc,B.H. et al. Sci Rep 11 (1), 4584 (2021)
REBASE ref # 35477
Complete sequence: 1,702,481 bp
GenBank #: AP026444
REBASE acronym: Hpy1291
Org_num: 62721
All begin VN1291_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5340 | Polyphosphate kinase Ppk | |||
| 5350 | S | S.Hpyfe58ORF5150P (98% identity) | CCANNNNNNTAA | S.Hpy1291ORF5360P |
| 5360 | M | M.Hpy155ORF5340P (99% identity) | CCANNNNNNTAA | M.Hpy1291ORF5360P |
| 5370 | R | Hpy155ORF5340P (72% identity) | CCANNNNNNTAA | Hpy1291ORF5360P |
| 5380 | type I restriction endonuclease subunit R | |||
| 8860 | Outer membrane protein HofF | |||
| 8870 | S | S.Hpyfe123ORF4195P (94% identity) | S.Hpy1291ORF8870P | |
| 8880 | Cadmium, zinc and cobalt-transporting ATPase | |||
| 9460 | Hydroxyethylthiazole kinase ThiM | |||
| 9470 | R | Hpyfe61ORF4835P (94% identity) | CCANNNNNNNCTT | Hpy1291ORF9490P |
| 9480 | S | S.HpyV001XV (95% identity) | CCANNNNNNNCTT | S.Hpy1291ORF9490P |
| 9490 | M | M.HpyMA05ORF4250P (94% identity) | CCANNNNNNNCTT | M.Hpy1291ORF9490P |
| 9500 | Integral membrane protein | |||
| 15930 | 362 aa hypothetical protein | |||
| 15940 | M | M.Hpy155ORF15750P (100% identity) | CAANNNNNNNTTG | M.Hpy1291ORF15940P |
| 15950 | S | S.HpyC010XIV (97% identity) | CAANNNNNNNTTG | S.Hpy1291ORF15940P |
| 15960 | FAD-dependent thymidylate synthase ThyX | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 90 | Type III restriction enzyme Res | |||
| 100 | RM | Hpy155ORF100P (100% identity) | Hpy1291ORF100P | |
| 110 | reverse transcriptase | |||
| 570 | Amidophosphoribosyltransferase | |||
| 580 | RM | HpyKG3ORF6960P (96% identity) | CYANNNNNNTTC | Hpy1291ORF580P |
| 590 | S | S.HpyBR1ORF7085P (88% identity) | S.Hpy1291ORF580P | |
| 600 | DNA polymerase I PolA | |||
| 1460 | Agmatine deiminase | |||
| 1470 | M | M2.Hpyfe32ORF6945P (99% identity) | CCTC | M1.Hpy1291ORF1470P |
| 1480 | M | M2.Hpy155ORF1470P (100% identity) | CCTC | M2.Hpy1291ORF1470P |
| 1490 | R | Hpy155ORF1470P (100% identity) | CCTC | Hpy1291ORF1470P |
| 1500 | type II DNA modification enzyme | |||
| 1490 | Restriction endonuclease | |||
| 1500 | M | M.Hpy155ORF1500P (100% identity) | GTSAC | M.Hpy1291ORF1500P |
| 1510 | R | Hpy155ORF1500P (100% identity) | GTSAC | Hpy1291ORF1500P |
| 1520 | 70 aa hypothetical protein | |||
| 1920 | Malonyl CoA-acyl carrier protein transacylase | |||
| 1930 | R | HpyT030IXP (96% identity) | Hpy1291ORF1940P | |
| 1940 | M | M.HpyCOL210X (94% identity) | M.Hpy1291ORF1940P | |
| 1950 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 2040 | Glycosyl transferase | |||
| 2050 | R | Hpyfe81ORF1020P (100% identity) | Hpy1291ORF2060P | |
| 2060 | M | M.Hpy155ORF2060P (100% identity) | M.Hpy1291ORF2060P | |
| 2070 | Methyl-accepting chemotaxis protein TlpB | |||
| 3590 | Exodeoxyribonuclease VII large subunit XseA | |||
| 3600 | M | M.HpyGU1CORF2850P (100% identity) | TCGA | M.Hpy1291ORF3600P |
| 3610 | 148 aa hypothetical protein | |||
| 3610 | 148 aa hypothetical protein | |||
| 3620 | R | Hpy155ORF3610P (100% identity) | CCGG | Hpy1291ORF3630P |
| 3630 | M | M.Hpy155ORF3610P (100% identity) | CCGG | M.Hpy1291ORF3630P |
| 3640 | ATP-dependent Clp protease, ATP-binding subunit | |||
| 4110 | Cyclic imide hydrolase | |||
| 4120 | R | Hpy155ORF4110P (100% identity) | CTNAG | Hpy1291ORF4130P |
| 4130 | M | M.HpyBS22ORF5765P (100% identity) | CTNAG | M.Hpy1291ORF4130P |
| 4140 | 125 aa hypothetical protein | |||
| 5530 | Outer membrane protein | |||
| 5540 | M | M.Hpy155ORF5510P (98% identity) | ATTAAT | M.Hpy1291ORF5540P |
| 5550 | Non-functional type II restriction endonuclease | |||
| 5560 | GTP-binding protein TypA | |||
| 5570 | M | M.Hpy155ORF5540P (100% identity) | ACNGT | M.Hpy1291ORF5570P |
| 5580 | R | Hpyfe93ORF4895P (100% identity) | ACNGT | Hpy1291ORF5570P |
| 5590 | Cytosine-specific methyltransferase | |||
| 5580 | Type II restriction endonuclease | |||
| 5590 | M | M.Hpy155ORF5560P (100% identity) | ACGT | M.Hpy1291ORF5590P |
| ??? | R | Hpy155ORF5560P (99% identity) | ACGT | Hpy1291ORF5590P |
| 5620 | Catalase-like protein | |||
| 7810 | Outer membrane protein | |||
| 7820 | RM | HpyMM08ORF3130BP (13% identity) | Hpy1291ORF7820BP | |
| 7830 | RM | Hpy155ORF7800AP (98% identity) | Hpy1291ORF7820AP | |
| 7840 | Anaerobic glycerol-3-phosphate dehydrogenase | |||
| 9150 | 58 aa hypothetical protein | |||
| 9160 | R | HpyV001IVP (100% identity) | CGWCG | Hpy1291ORF9170P |
| 9170 | M | M.Hpy155ORF9190P (100% identity) | CGWCG | M.Hpy1291ORF9170P |
| 9180 | 178 aa hypothetical protein | |||
| 9990 | Flagellar hook protein FlgE | |||
| 10000 | R | HpySG19IXP (96% identity) | GTNNAC | Hpy1291ORF10010P |
| 10010 | M | M.Hpy63ORF905P (97% identity) | GTNNAC | M.Hpy1291ORF10010P |
| 10020 | DNA helicase | |||
| 11750 | Biotin carboxylase AccC | |||
| 11760 | M | M.Hpy155ORF14820P (99% identity) | TCNNGA | M.Hpy1291ORF11760P |
| ??? | R | Hpy155ORF14820P (100% identity) | TCNNGA | Hpy1291ORF11760P |
| 11790 | Laminin subunit alpha-2 | |||
| 12090 | flagellar protein FlgN | |||
| 12100 | M | M.HpyV004XIV (100% identity) | GCGC | M.Hpy1291ORF12100P |
| 12110 | FlgM protein | |||
| 12930 | Haloacid dehalogenase | |||
| 12940 | M | M.Hpy155ORF13630P (100% identity) | CATG | M.Hpy1291ORF12940P |
| 12950 | 50 aa hypothetical protein | |||
| 14320 | DNA methyltransferase | |||
| ??? | R | HpyV006VIIIP (97% identity) | GANTC | Hpy1291ORF14350P |
| 14350 | M | M.HpyMA06III (99% identity) | GANTC | M.Hpy1291ORF14350P |
| 14360 | 180 aa hypothetical protein | |||
| 14480 | OmpR family DNA-binding response regulator | |||
| 14490 | R | Hpy155ORF12110P (100% identity) | Hpy1291ORF14490P | |
| 14500 | 285 aa hypothetical protein | |||
| 15350 | 145 aa hypothetical protein | |||
| 15360 | R | HpyJA112XVP (99% identity) | TGCA | Hpy1291ORF15370P |
| 15370 | M | M.Hpyfe64ORF7605P (99% identity) | TGCA | M.Hpy1291ORF15370P |
| 15380 | 67 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 60 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy155ORF70P (98% identity) | M.Hpy1291ORF70P | |
| 90 | R | Hpy155ORF70P (97% identity) | Hpy1291ORF70P | |
| 100 | 1181 aa hypothetical protein | |||
| 1220 | Biotin synthase BioB | |||
| 1230 | R | Hpy155ORF1230P (100% identity) | Hpy1291ORF1240P | |
| 1240 | M | M.Hpy155ORF1230P (98% identity) | M.Hpy1291ORF1240P | |
| 1250 | endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7020 | sel1 repeat family protein | |||
| 7030 | R | Hpy155GmrSDP (96% identity) | Hpy1291GmrSDP | |
| 7040 | Modulator of drug activity | |||