Neisseria gonorrhoeae 10562 |
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Putative Neisseria gonorrhoeae 10562 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
| Sequence length: | GenBank #: | |
| Chromosome: | 2,223,176 bp | CP106815 |
| Chromosome: | 2,201,001 bp | CP106773 |
REBASE acronym:
Org_num:
All begin LLE35_, OCL41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2070 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2075 | M | M.Ngo10562aORF2070P (100% identity) | M.Ngo10562ORF2075P | |
| 2080 | DNA damage-inducible protein D | |||
| 2085 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.Ngo10562ORF2075P |
| 2090 | S | S2.NgoN160ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.Ngo10562ORF2075P |
| 2095 | R | Ngo9399ORF2075P (100% identity) | Ngo10562ORF2075P | |
| 2100 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4855 | ABC transporter | |||
| 4860 | M | M.NgoPID1ORF461P (100% identity) | GAGNNNNNTAC | M.Ngo10562ORF4860P |
| 4865 | 280 aa hypothetical protein | |||
| 4870 | 186 aa hypothetical protein | |||
| 4875 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo10562ORF4860P |
| 4880 | hydroxyacid dehydrogenase | |||
| 4885 | R | NgoPID1ORF461P (99% identity) | GAGNNNNNTAC | Ngo10562ORF4860P |
| 4890 | replication-associated recombination protein A | |||
| Chromosome | ||||
| 2065 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2070 | M | M.Ngo10562ORF2075P (100% identity) | M.Ngo10562aORF2070P | |
| 2075 | DNA damage-inducible protein D | |||
| 2080 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.Ngo10562aORF2070P |
| 2085 | S | S2.NgoN160ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.Ngo10562aORF2070P |
| 2090 | R | Ngo9399ORF2075P (100% identity) | Ngo10562aORF2070P | |
| 2095 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4850 | ABC transporter | |||
| 4855 | M | M.NgoPID1ORF461P (100% identity) | GAGNNNNNTAC | M.Ngo10562aORF4855P |
| 4860 | 280 aa hypothetical protein | |||
| 4865 | 186 aa hypothetical protein | |||
| 4870 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo10562aORF4855P |
| 4875 | hydroxyacid dehydrogenase | |||
| 4880 | R | NgoPID1ORF461P (99% identity) | GAGNNNNNTAC | Ngo10562aORF4855P |
| 4885 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo10562ORF35P |
| 40 | site-specific DNA-methyltransferase | |||
| 35 | restriction endonuclease | |||
| ??? | M | M.NgoWSORF8P (100% identity) | GATC | M.Ngo10562ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1540 | phenylalanine--tRNA ligase subunit alpha | |||
| 1545 | V | V.NgoWSORF391P (100% identity) | V.Ngo10562ORF1550P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo10562ORF1550P |
| 1560 | R | Ngo9399ORF1545P (100% identity) | CCGG | Ngo10562ORF1550P |
| 1565 | phenylalanine--tRNA ligase subunit beta | |||
| 1835 | IS1595 family transposase | |||
| 1840 | M | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | M.Ngo10562ORF1840P |
| 1845 | S | S.NgoFA19ORF100P (100% identity) | GACNNNNNTGA | S.Ngo10562ORF1840P |
| 1850 | 140 aa hypothetical protein | |||
| 1870 | uroporphyrinogen decarboxylase | |||
| 1875 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo10562ORF1885P | |
| 1880 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo10562ORF1885P |
| 1885 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo10562ORF1885P |
| 1890 | DNA repair protein RadA | |||
| 3675 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3680 | R | NgoFQ01ORF4235P (100% identity) | GCCGGC | Ngo10562ORF3685P |
| 3685 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo10562ORF3685P |
| 3690 | anthranilate synthase component I | |||
| 4985 | 3-isopropylmalate dehydratase small subunit | |||
| 4990 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo10562ORF4990P |
| 4995 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo10562ORF4990P |
| 5000 | 3-isopropylmalate dehydrogenase | |||
| 6140 | replication initiation factor domain-containing | |||
| 6145 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo10562ORF6160P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo10562ORF6160P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo10562ORF6160P |
| 6170 | 48 aa hypothetical protein | |||
| 9620 | FUSC family protein | |||
| ??? | R | NgoWFORF2088P (100% identity) | GGCC | Ngo10562ORF9635P |
| 9635 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo10562ORF9635P |
| 9640 | ribosome recycling factor | |||
| 10160 | IS5/IS1182 family transposase | |||
| 10165 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo10562ORF10170P |
| 10170 | M | M1.NgoFA19I (100% identity) | GGTGA | M1.Ngo10562ORF10170P |
| 10175 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo10562ORF10170P |
| 10180 | RNA-binding transcriptional accessory protein | |||
| 10710 | GTPase ObgE | |||
| 10715 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo10562ORF10715P |
| 10720 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo10562ORF10715P |
| 10725 | cysteine--tRNA ligase | |||
| Chromosome | ||||
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo10562aORF35P |
| 40 | site-specific DNA-methyltransferase | |||
| 35 | restriction endonuclease | |||
| ??? | M | M.NgoWOORF8P (100% identity) | GATC | M.Ngo10562aORFAP |
| 45 | 184 aa hypothetical protein | |||
| 1535 | phenylalanine--tRNA ligase subunit alpha | |||
| 1540 | V | V.NgoWSORF391P (100% identity) | V.Ngo10562aORF1545P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo10562aORF1545P |
| 1555 | R | Ngo9399ORF1545P (100% identity) | CCGG | Ngo10562aORF1545P |
| 1560 | phenylalanine--tRNA ligase subunit beta | |||
| 1830 | IS1595 family transposase | |||
| 1835 | M | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | M.Ngo10562aORF1835P |
| 1840 | S | S.NgoFA19ORF100P (100% identity) | GACNNNNNTGA | S.Ngo10562aORF1835P |
| 1845 | 140 aa hypothetical protein | |||
| 1865 | uroporphyrinogen decarboxylase | |||
| 1870 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo10562aORF1880P | |
| 1875 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo10562aORF1880P |
| 1880 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo10562aORF1880P |
| 1885 | DNA repair protein RadA | |||
| 3675 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3680 | R | NgoFQ01ORF4235P (100% identity) | GCCGGC | Ngo10562aORF3685P |
| 3685 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo10562aORF3685P |
| 3690 | anthranilate synthase component I | |||
| 4980 | 3-isopropylmalate dehydratase small subunit | |||
| 4985 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo10562aORF4985P |
| 4990 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo10562aORF4985P |
| 4995 | 3-isopropylmalate dehydrogenase | |||
| 6135 | replication initiation factor domain-containing | |||
| 6140 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo10562aORF6155P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo10562aORF6155P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo10562aORF6155P |
| 6165 | 48 aa hypothetical protein | |||
| 9480 | FUSC family protein | |||
| ??? | R | NgoWFORF2088P (100% identity) | GGCC | Ngo10562aORF9495P |
| 9495 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo10562aORF9495P |
| 9500 | ribosome recycling factor | |||
| 10020 | IS5/IS1182 family transposase | |||
| 10025 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo10562aORF10030P |
| 10030 | M | M1.NgoFA19I (100% identity) | GGTGA | M1.Ngo10562aORF10030P |
| 10035 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo10562aORF10030P |
| 10040 | RNA-binding transcriptional accessory protein | |||
| 10570 | GTPase ObgE | |||
| 10575 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo10562aORF10575P |
| 10580 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo10562aORF10575P |
| 10585 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5630 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5635 | R | Ngos1291ORF8455P (100% identity) | Ngo10562ORF5640P | |
| 5640 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo10562ORF5640P | |
| 5645 | peptidylprolyl isomerase | |||
| Chromosome | ||||
| 5620 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5625 | R | Ngos1291ORF8455P (100% identity) | Ngo10562aORF5630P | |
| 5630 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo10562aORF5630P | |
| 5635 | peptidylprolyl isomerase | |||