Neisseria gonorrhoeae 9035 |
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Putative Neisseria gonorrhoeae 9035 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,223,133 bp
GenBank #: CP104546
REBASE acronym: Ngo9035
Org_num: 62277
All begin NDL71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2400 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2405 | M | M.NgoSW0002ORF2090P (100% identity) | M.Ngo9035ORF2405P | |
| 2410 | DNA damage-inducible protein D | |||
| 2415 | S | S1.NgoWOORF429P (100% identity) | GCANNNNNNNNTGC | S1.Ngo9035ORF2405P |
| 2420 | S | S2.NgoN160ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.Ngo9035ORF2405P |
| 2425 | R | Ngo10538ORF2405P (100% identity) | Ngo9035ORF2405P | |
| 2430 | ATP-dependent Clp protease ATP-binding subunit | |||
| 5230 | ABC transporter | |||
| 5235 | M | M.NgoWSI (100% identity) | GAGNNNNNTAC | M.Ngo9035ORF5235P |
| 5240 | 279 aa hypothetical protein | |||
| 5245 | 186 aa hypothetical protein | |||
| 5250 | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.Ngo9035ORF5235P |
| 5255 | hydroxyacid dehydrogenase | |||
| 5260 | R | NgoWPIP (99% identity) | GAGNNNNNTAC | Ngo9035ORF5235P |
| 5265 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8580 | replication initiation factor domain-containing | |||
| 8585 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo9035ORF8600P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo9035ORF8600P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo9035ORF8600P |
| 8610 | 48 aa hypothetical protein | |||
| 9815 | cysteine--tRNA ligase | |||
| 9820 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo9035ORF9825P |
| 9825 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo9035ORF9825P |
| 9830 | GTPase ObgE | |||
| 10345 | RNA-binding transcriptional accessory protein | |||
| 10350 | M | M1.NgoWSIII (100% identity) | GGTGA | M1.Ngo9035ORF10350P |
| 10355 | M | M1.Ngos1291II (100% identity) | GGTGA | M2.Ngo9035ORF10350P |
| 10360 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo9035ORF10350P |
| 10365 | 93 aa hypothetical protein | |||
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo9035ORF35P |
| 40 | site-specific DNA-methyltransferase | |||
| 35 | restriction endonuclease | |||
| 40 | M | M.NgoWPORF8P (93% identity) | GATC | M.Ngo9035ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1240 | 62 aa hypothetical protein | |||
| 1245 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo9035ORF1245P |
| 1250 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo9035ORF1245P |
| 1255 | excinuclease ABC subunit UvrA | |||
| 1865 | phenylalanine--tRNA ligase subunit alpha | |||
| 1870 | V | V.NgoWSORF391P (100% identity) | V.Ngo9035ORF1875P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo9035ORF1875P |
| 1885 | R | NgoWSORF391P (100% identity) | CCGG | Ngo9035ORF1875P |
| 1890 | phenylalanine--tRNA ligase subunit beta | |||
| 2170 | N-6 DNA methylase | |||
| 2175 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo9035ORF2175P |
| 2180 | 140 aa hypothetical protein | |||
| 2200 | uroporphyrinogen decarboxylase | |||
| 2205 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo9035ORF2215P | |
| 2210 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo9035ORF2215P |
| 2215 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo9035ORF2215P |
| 2220 | DNA repair protein RadA | |||
| 4035 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 4040 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo9035ORF4045P |
| 4045 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo9035ORF4045P |
| 4050 | anthranilate synthase component I | |||
| 5370 | 3-isopropylmalate dehydratase small subunit | |||
| 5375 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo9035ORF5375P |
| 5380 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo9035ORF5375P |
| 5385 | 3-isopropylmalate dehydrogenase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5555 | tRNA pseudouridine(55) synthase TruB | |||
| 5560 | M | M.Ngo9ORF1715P (99% identity) | GCAGA | M.Ngo9035ORF5560P |
| 5565 | R | NgoNCORF1272P (100% identity) | GCAGA | Ngo9035ORF5560P |
| 5570 | alpha-hydroxy-acid oxidizing protein | |||
| 6020 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 6025 | R | NgoWPIIP (100% identity) | Ngo9035ORF6030P | |
| 6030 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo9035ORF6030P | |
| 6035 | peptidylprolyl isomerase | |||