Escherichia coli DFK.1 |
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Putative Escherichia coli DFK.1 RM systems
Ref: Sun,Y. unpublished
REBASE ref # 32922
| Sequence length: | GenBank #: | |
| Chromosome: | 5,064,316 bp | CP104848 |
| plasmid unnamed1: | 85,007 bp | CP104849 |
REBASE acronym: EcoDFK1
Org_num: 62239
All begin N7218_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4700 | endoribonuclease SymE | |||
| 4705 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoDFK1ORF4715P |
| 4710 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoDFK1ORF4715P |
| 4715 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoDFK1ORF4715P |
| 4720 | restriction endonuclease | |||
| 6890 | ash family protein | |||
| 6895 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoDFK1ORF6900P |
| 6900 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoDFK1ORF6900P |
| 6905 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoDFK1ORF6900P |
| 6910 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1700 | cell division protein DamX | |||
| 1705 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDFK1DamP |
| 1710 | ribulose-phosphate 3-epimerase | |||
| 2300 | DUF2556 family protein | |||
| 2305 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoDFK1ORF2305P |
| 2310 | DNA-binding transcriptional regulator Fis | |||
| 4310 | helix-turn-helix domain-containing protein | |||
| 4315 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoDFK1ORF4315P |
| 4320 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoDFK1ORF4315P |
| 4325 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoDFK1ORF4315P |
| 4330 | McrC family protein | |||
| 4925 | PerC family transcriptional regulator | |||
| 4930 | M | M.Sso30ORF925P (100% identity) | GATC | M.EcoDFK1ORF4930P |
| 4935 | LexA family transcriptional regulator | |||
| 4960 | 67 aa hypothetical protein | |||
| 4965 | M | M.Ecoppa6ORF4450P (100% identity) | M.EcoDFK1ORF4965P | |
| 4970 | class II holin family protein | |||
| 10375 | 71 aa hypothetical protein | |||
| 10380 | M | M.KpnYN1ORFGP (89% identity) | M.EcoDFK1ORF10380P | |
| 10385 | helix-turn-helix domain-containing protein | |||
| 12640 | TrmB family transcriptional regulator | |||
| 12645 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoDFK1ORF12645P |
| 12660 | DUF3927 family protein | |||
| plasmid unnamed1 | ||||
| 25135 | 103 aa hypothetical protein | |||
| 25140 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoDFK1ORF25140P |
| 25145 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4325 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 4330 | R | EcosS9McrCP (100% identity) | EcoDFK1McrCP | |
| 4335 | R | Eco086McrBP (100% identity) | EcoDFK1McrBBP | |
| 4340 | IS3-like element ISEc52 family transposase | |||
| 4345 | R | Eco2547McrBP (55% identity) | EcoDFK1McrBAP | |
| 4350 | IS3-like element ISEc52 family transposase | |||
| 4715 | type I restriction-modification system subunit | |||
| 4720 | R | EcosS9MrrP (100% identity) | EcoDFK1MrrP | |
| 4725 | BrnT family toxin | |||