Escherichia coli SHP24 |
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Putative Escherichia coli SHP24 RM systems
Ref: Liu,J.H. and Wu,R.J. unpublished
REBASE ref # 35375
| Sequence length: | GenBank #: | |
| Chromosome: | 4,837,142 bp | CP104788 |
| plasmid pHNSHP24-1: | 259,017 bp | CP104789 |
| plasmid pHNSHP24-2: | 186,621 bp | CP104790 |
| plasmid pHNSHP24-3: | 99,354 bp | CP104791 |
| plasmid pHNSHP24-4: | 76,121 bp | CP104792 |
REBASE acronym: EcoSHP24
Org_num: 62249
All begin N6H17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10810 | M48 family metallopeptidase | |||
| 10815 | R | EcoXD35ORF12955P (100% identity) | TCAGNNNNNGGT | EcoSHP24ORF10835P |
| 10820 | cold shock domain-containing protein | |||
| 10825 | YecA family protein | |||
| 10830 | S | S.EcoXD35ORF12955P (100% identity) | TCAGNNNNNGGT | S.EcoSHP24ORF10835P |
| 10835 | M | M.EcoS43ORF18655P (100% identity) | TCAGNNNNNGGT | M.EcoSHP24ORF10835P |
| 10840 | 388 aa hypothetical protein | |||
| plasmid pHNSHP24-3 | ||||
| 26405 | type II toxin-antitoxin system Phd/YefM family | |||
| 26410 | M | M.SspS13ORF175P (99% identity) | M.EcoSHP24ORF26410P | |
| 26415 | S | S.SspS13ORF175P (100% identity) | S.EcoSHP24ORF26410P | |
| 26420 | R | EcoD72ORF22680P (99% identity) | EcoSHP24ORF26410P | |
| 26425 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1585 | TrmB family transcriptional regulator | |||
| 1590 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoSHP24ORF1590P | |
| 1595 | phage holin, lambda family | |||
| 3065 | recombination protein NinB | |||
| 3070 | M | M.EcoTB182AORF20675P (99% identity) | GATC | M.EcoSHP24ORF3070P |
| 3075 | NinE family protein | |||
| 4825 | TraR/DksA family transcriptional regulator | |||
| 4830 | M | M.SflLIN17ORF14475P (100% identity) | GATC | M.EcoSHP24ORF4830P |
| 4835 | replication endonuclease | |||
| 6500 | TrmB family transcriptional regulator | |||
| 6505 | M | M.EcoSTEC636ORF9825P (99% identity) | M.EcoSHP24ORF6505P | |
| 6525 | 40 aa hypothetical protein | |||
| 8915 | 95 aa hypothetical protein | |||
| 8920 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoSHP24ORF8920P | |
| 8925 | DUF977 family protein | |||
| 11175 | drug/metabolite exporter YedA | |||
| 11180 | V | V.Ecos53DcmP (100% identity) | V.EcoSHP24DcmP | |
| 11185 | M | M.Ecos53DcmP (100% identity) | CCWGG | M.EcoSHP24DcmP |
| 11190 | phosphohydrolase | |||
| 17930 | DNA-binding transcriptional regulator Fis | |||
| 17935 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoSHP24ORF17935P |
| 17940 | DUF2556 family protein | |||
| 23695 | antiterminator Q family protein | |||
| 23700 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.EcoSHP24ORF23700P |
| 23705 | R | EcoPF16ORF20830P (100% identity) | GTCGAC | EcoSHP24ORF23700P |
| 23710 | DUF262 domain-containing protein | |||
| 23715 | TrmB family transcriptional regulator | |||
| 23720 | M | M.Eco14C07ORF8940P (100% identity) | M.EcoSHP24ORF23720P | |
| 23740 | 0 aa hypothetical protein | |||
| plasmid pHNSHP24-1 | ||||
| 24240 | thermonuclease family protein | |||
| 24245 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoSHP24ORF24245P |
| 24250 | 55 aa hypothetical protein | |||
| 25035 | 48 aa hypothetical protein | |||
| 25040 | M | M.YpsF1ORFBP (100% identity) | M.EcoSHP24ORF25040P | |
| 25045 | 202 aa hypothetical protein | |||
| 25155 | DNA-binding protein | |||
| 25160 | M | M.YpsF1ORFDP (95% identity) | M.EcoSHP24ORF25160P | |
| 25165 | 284 aa hypothetical protein | |||
| plasmid pHNSHP24-2 | ||||
| 25895 | 103 aa hypothetical protein | |||
| 25900 | M | M.Eco02A1ORF26680P (100% identity) | M.EcoSHP24ORF25900P | |
| 25905 | 73 aa hypothetical protein | |||
| plasmid pHNSHP24-3 | ||||
| 26515 | tellurite/colicin resistance protein | |||
| 26530 | M | M.Sen0904ORF23445P (100% identity) | M.EcoSHP24ORF26530P | |
| 26535 | recombination-associated protein RdgC | |||
| plasmid pHNSHP24-4 | ||||
| 26810 | 97 aa hypothetical protein | |||
| 26815 | M | M.Sen527ORF25750P (99% identity) | M.EcoSHP24ORF26815P | |
| 26820 | 73 aa hypothetical protein | |||