Streptococcus suis ISU2912 |
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Putative Streptococcus suis ISU2912 RM systems
Ref: Nicholson,T.L. et al. unpublished
REBASE ref # 20989
Complete sequence: 2,720,381 bp
GenBank #: CP017785
REBASE acronym: Ssu2912
Org_num: 17561
All begin A7J10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 410 | DEAD/DEAH box helicase | |||
| 415 | S | S3.Ssu4ORF3320P (66% identity) | S2.Ssu2912ORF430P | |
| 420 | cell filamentation protein Fic | |||
| 425 | S | S3.SsuYZDH1ORF2625P (43% identity) | S1.Ssu2912ORF430P | |
| 430 | M | M.SsuMA4ORFJP (99% identity) | M.Ssu2912ORF430P | |
| 435 | serine--tRNA ligase | |||
| 2505 | 71 aa hypothetical protein | |||
| ??? | M | M.SsuS11ORF4005P (89% identity) | M.Ssu2912ORF2510P | |
| 2520 | 141 aa hypothetical protein | |||
| 5475 | 210 aa hypothetical protein | |||
| 5480 | S | S.SsaVT517ORF730P (47% identity) | S.Ssu2912ORF10705P | |
| 5485 | M | M.SsuSs109ORF1830P (99% identity) | M.Ssu2912ORF10705P | |
| 5490 | R | SsucSS389ORF5280P (95% identity) | Ssu2912ORF10705P | |
| 5495 | pyridine nucleotide-disulfide oxidoreductase | |||
| 9545 | threonine synthase | |||
| 9550 | R | Ssu17ORF1675P (98% identity) | Ssu2912ORF8540P | |
| 9555 | anticodon nuclease | |||
| 9560 | S | S3.SsuMA4ORFEP (84% identity) | S2.Ssu2912ORF8540P | |
| 9565 | S | S1.SsuC2ORF1555P (94% identity) | S1.Ssu2912ORF8540P | |
| 9570 | cell filamentation protein Fic | |||
| 9575 | M | M.SsuC2ORF1555P (99% identity) | M.Ssu2912ORF8540P | |
| 9580 | bifunctional acetaldehyde-CoA/alcohol | |||
| 10985 | IS4 family transposase | |||
| 10990 | R | Ssu1112SORF9435P (65% identity) | Ssu2912ORF10995P | |
| 10995 | S | S4.SsuDNR43ORF9145P (98% identity) | S.Ssu2912ORF10995P | |
| 11000 | site-specific integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1295 | DEAD/DEAH box helicase | |||
| 1300 | M | M.SsuAKJ18ORF9080P (100% identity) | ACGT | M.Ssu2912ORF1300P |
| 1305 | R | SsuLS9NORFFP (99% identity) | ACGT | Ssu2912ORF1300P |
| 1310 | 313 aa hypothetical protein | |||
| 3865 | 102 aa hypothetical protein | |||
| 3870 | M | M2.SsuSs48ORF4250P (96% identity) | M.Ssu2912ORF3870P | |
| 3875 | 109 aa hypothetical protein | |||
| 3910 | 135 aa hypothetical protein | |||
| 3920 | M | M.SspHN38ORFJP (98% identity) | M.Ssu2912ORF3920P | |
| 3925 | 123 aa hypothetical protein | |||
| 5220 | DNA topoisomerase IV subunit A | |||
| 5225 | S | S2.HpaSH03ORF4015P (38% identity) | S1.Ssu2912ORF9965P | |
| 5235 | RM | SsuAKJ18ORF5795P (99% identity) | Ssu2912ORF9965P | |
| 5240 | GTP pyrophosphokinase | |||
| 5875 | 142 aa hypothetical protein | |||
| 5880 | M | M.SsuYS77ORFEP (98% identity) | M.Ssu2912ORF595P | |
| 5885 | replication initiator protein | |||
| 7645 | 114 aa hypothetical protein | |||
| 7650 | M | M1.SsuSs48ORF4250P (96% identity) | M.Ssu2912ORF11720P | |
| 7655 | 77 aa hypothetical protein | |||
| 9210 | 79 aa hypothetical protein | |||
| 9215 | M | M.Ssu2812ORF3780P (93% identity) | GATC | M.Ssu2912ORF3265P |
| 9220 | 694 aa hypothetical protein | |||
| 11150 | X-Pro aminopeptidase | |||
| 11155 | R | Ssu1112SORF9630P (95% identity) | GATC | Ssu2912ORF1000P |
| 11160 | M | M2.SsuS26ORF2155P (98% identity) | GATC | M1.Ssu2912ORF1000P |
| 11165 | M | M2.SsuAKJ18ORF10075P (98% identity) | GATC | M2.Ssu2912ORF1000P |
| 11170 | 448 aa hypothetical protein | |||
| 12190 | 16S rRNA | |||
| 12195 | M | M.SsuFJSM5ORF11905P (100% identity) | M.Ssu2912ORF8330P | |
| 12200 | 559 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6685 | 249 aa hypothetical protein | |||
| 6690 | R | SsuYZDH1ORF4185P (98% identity) | Ssu2912ORF3455P | |
| 6695 | 167 aa hypothetical protein | |||
| 6700 | 132 aa hypothetical protein | |||
| 6705 | M | M.SmiB6ORF1249P (71% identity) | M.Ssu2912ORF3455P | |
| 6710 | 80 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4595 | glutamine-hydrolyzing GMP synthase | |||
| 4600 | R | SsuAKJ18McrCP (99% identity) | Ssu2912McrCP | |
| 4605 | R | SsuC90McrBP (96% identity) | Ssu2912McrBP | |
| 4610 | 262 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 965 | 73 aa hypothetical protein | |||
| 970 | M | M.SsuYS77ORFKP (100% identity) | M.Ssu2912ORF970P | |
| 975 | 86 aa hypothetical protein | |||