Photobacterium damselae subsp. damselae 04Ya311 |
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Putative Photobacterium damselae subsp. damselae 04Ya311 RM systems
Ref: Yano,H. et al. unpublished
REBASE ref # 35265
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,211,070 bp | AP026780 |
| chromosome 2: | 1,227,889 bp | AP026781 |
| plasmid pAQU1: | 203,929 bp | AP026782 |
REBASE acronym: Pdaa311
Org_num: 61841
All begin PDY_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 31290 | WYL domain-containing protein | |||
| 31300 | M | M.Afi5LCORFBP (96% identity) | M.Pdaa311ORF31300P | |
| 31310 | S | S.LcaM561ORF13675P (63% identity) | S.Pdaa311ORF31300P | |
| 31320 | 470 aa hypothetical protein | |||
| 31330 | 663 aa hypothetical protein | |||
| 31340 | R | Vow5012ORFBP (98% identity) | Pdaa311ORF31300P | |
| 31350 | 54 aa hypothetical protein | |||
| plasmid pAQU1 | ||||
| 38450 | 195 aa hypothetical protein | |||
| 38460 | M | M.Pda311ORFDP (100% identity) | M.Pdaa311ORF38460P | |
| 38470 | S | S.Pda311ORFDP (100% identity) | S.Pdaa311ORF38460P | |
| 38480 | 431 aa hypothetical protein | |||
| 38490 | 161 aa hypothetical protein | |||
| 38500 | R | Pda311ORFDP (100% identity) | Pdaa311ORF38460P | |
| 38510 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 22390 | 675 aa hypothetical protein | |||
| 22400 | M | M.Pda906DndBP (100% identity) | M.Pdaa311DndBP | |
| 22410 | 588 aa hypothetical protein | |||
| 22400 | 370 aa hypothetical protein | |||
| 22410 | M | M.Pda906DndCP (98% identity) | M.Pdaa311DndCP | |
| 22420 | 669 aa hypothetical protein | |||
| 22410 | 588 aa hypothetical protein | |||
| 22420 | M | M.Pda906DndDP (99% identity) | M.Pdaa311DndDP | |
| 22430 | 116 aa hypothetical protein | |||
| 22420 | 669 aa hypothetical protein | |||
| 22430 | M | M.Ple12DndEP (95% identity) | M.Pdaa311DndEP | |
| 22440 | 376 aa hypothetical protein | |||
| 22450 | 168 aa hypothetical protein | |||
| ??? | R | Pda906DndE2P (64% identity) | Pdaa311ORF22460P | |
| 22470 | 168 aa hypothetical protein | |||
| 22480 | R | Pda39428DptHP (97% identity) | Pdaa311DptHP | |
| 22490 | 446 aa hypothetical protein | |||
| 22480 | 1715 aa hypothetical protein | |||
| 22490 | R | Pda906DptGP (100% identity) | Pdaa311DptGP | |
| 22500 | 529 aa hypothetical protein | |||
| 22490 | 446 aa hypothetical protein | |||
| 22500 | R | Pda906DptFP (100% identity) | Pdaa311DptFP | |
| 22510 | sporulation-control protein | |||
| chromosome 2 | ||||
| 34820 | 2-succinyl-6-hydroxy-2, | |||
| 34830 | M | M.PdaXP11ORF790P (100% identity) | M.Pdaa311ORF34830P | |
| 34840 | phosphohydrolase | |||
| plasmid pAQU1 | ||||
| 38100 | 91 aa hypothetical protein | |||
| 38110 | M | M.Vsp68ORF21660P (100% identity) | M.Pdaa311ORF38110P | |
| 38120 | 80 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 32280 | 188 aa hypothetical protein | |||
| 32290 | R | Pda1608McrBP (99% identity) | Pdaa311McrBP | |
| 32300 | R | Pda904681McrCP (82% identity) | Pdaa311McrCP | |
| 32310 | DNA mismatch repair protein MutT | |||