Escherichia coli IPCEC42 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli IPCEC42 RM systems
Ref: Suzuki,M. et al. unpublished
REBASE ref # 35190
| Sequence length: | GenBank #: | |
| Chromosome: | 5,194,327 bp | AP026788 |
| plasmid pIPCEC42_1: | 165,449 bp | AP026789 |
REBASE acronym: EcoCEC42
Org_num: 61548
All begin IPCEC42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 820 | 184 aa hypothetical protein | |||
| 830 | R | EcoCEC48ORF880P (100% identity) | ACYNNNNNNGTTC | EcoCEC42ORF850P |
| 840 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoCEC42ORF850P |
| 850 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoCEC42ORF850P |
| 860 | 168 aa hypothetical protein | |||
| 37100 | 260 aa hypothetical protein | |||
| 37110 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoCEC42ORF37120P |
| 37120 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoCEC42ORF37120P |
| 37130 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoCEC42ORF37120P |
| 37140 | 52 aa hypothetical protein | |||
| 40630 | 388 aa hypothetical protein | |||
| 40640 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoCEC42ORF40640P |
| 40650 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoCEC42ORF40640P |
| 40660 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoCEC42ORF40640P |
| 40670 | endoribonuclease SymE | |||
| 45010 | transposase | |||
| 45020 | R | EcotcmA3ORF16550P (100% identity) | EcoCEC42ORF45060P | |
| 45030 | 462 aa hypothetical protein | |||
| 45040 | ATP-dependent DNA helicase RecQ | |||
| 45050 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoCEC42ORF45060P | |
| 45060 | M | M.Pre393ORF2750P (100% identity) | M.EcoCEC42ORF45060P | |
| 45070 | 74 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3830 | cell division protein DamX | |||
| 3840 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoCEC42DamP |
| 3850 | ribulose-phosphate 3-epimerase | |||
| 4960 | acrEF/envCD operon transcriptional regulator | |||
| 4970 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoCEC42ORF4970P |
| 4980 | DNA-binding protein Fis | |||
| 19270 | phosphohydrolase | |||
| 19280 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoCEC42DcmP |
| 19290 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoCEC42DcmP |
| 19300 | inner membrane transporter YedA | |||
| 25980 | anti-adapter protein IraM | |||
| 25990 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoCEC42ORF25990P |
| 26000 | 65 aa hypothetical protein | |||
| 30410 | 118 aa hypothetical protein | |||
| 30420 | M | M.KpnYN1ORFGP (89% identity) | M.EcoCEC42ORF30420P | |
| 30430 | 71 aa hypothetical protein | |||
| plasmid pIPCEC42_1 | ||||
| 49530 | 73 aa hypothetical protein | |||
| 49540 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoCEC42ORF49540P |
| 49550 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40620 | membrane protein | |||
| 40630 | R | EcosS9MrrP (100% identity) | EcoCEC42MrrP | |
| 40640 | DNA methyltransferase | |||
| 41280 | 84 aa hypothetical protein | |||
| 41290 | R | EcosS3McrBP (100% identity) | EcoCEC42McrBP | |
| 41300 | R | EcosS9McrCP (100% identity) | EcoCEC42McrCP | |
| 41310 | 579 aa hypothetical protein | |||