Neisseria gonorrhoeae 9343 |
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Putative Neisseria gonorrhoeae 9343 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,217,931 bp
GenBank #: CP098548
REBASE acronym: Ngo9343
Org_num: 61767
All begin NDQ69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2045 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2050 | M | M.NgoFA19ORF148P (100% identity) | M.Ngo9343ORF2050P | |
| 2055 | DNA damage-inducible protein D | |||
| 2060 | S | S2.Ngo207ORF10535P (100% identity) | GCANNNNNNNNTGC | S1.Ngo9343ORF2050P |
| 2065 | S | S2.NgoN160ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.Ngo9343ORF2050P |
| 2070 | R | Ngo9399ORF2075P (100% identity) | Ngo9343ORF2050P | |
| 2075 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4750 | ABC transporter | |||
| 4755 | M | M.NgoPID1ORF461P (100% identity) | GAGNNNNNTAC | M.Ngo9343ORF4755P |
| 4760 | 280 aa hypothetical protein | |||
| 4765 | 186 aa hypothetical protein | |||
| 4770 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo9343ORF4755P |
| 4775 | hydroxyacid dehydrogenase | |||
| 4780 | R | NgoPID1ORF461P (99% identity) | GAGNNNNNTAC | Ngo9343ORF4755P |
| 4785 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo9343ORF40P |
| ??? | M | M.NgoWSORF8P (100% identity) | GATC | M.Ngo9343ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1520 | phenylalanine--tRNA ligase subunit alpha | |||
| 1525 | V | V.NgoWSORF391P (100% identity) | V.Ngo9343ORF1530P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo9343ORF1530P |
| 1540 | R | Ngo9399ORF1545P (100% identity) | CCGG | Ngo9343ORF1530P |
| 1545 | phenylalanine--tRNA ligase subunit beta | |||
| 1815 | N-6 DNA methylase | |||
| 1820 | S | S.NgoFA19ORF100P (100% identity) | GACNNNNNTGA | S.Ngo9343ORF1820P |
| 1825 | 140 aa hypothetical protein | |||
| 1845 | uroporphyrinogen decarboxylase | |||
| 1850 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo9343ORF1860P | |
| 1855 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo9343ORF1860P |
| 1860 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo9343ORF1860P |
| 1865 | DNA repair protein RadA | |||
| 3575 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3580 | R | NgoFQ01ORF4235P (100% identity) | GCCGGC | Ngo9343ORF3585P |
| 3585 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo9343ORF3585P |
| 3590 | anthranilate synthase component I | |||
| 4875 | 3-isopropylmalate dehydratase small subunit | |||
| 4880 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo9343ORF4880P |
| 4885 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo9343ORF4880P |
| 4890 | 3-isopropylmalate dehydrogenase | |||
| 6015 | replication initiation factor domain-containing | |||
| 6020 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo9343ORF6035P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo9343ORF6035P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo9343ORF6035P |
| 6045 | 48 aa hypothetical protein | |||
| 9490 | FUSC family protein | |||
| ??? | R | NgoWFORF2088P (100% identity) | GGCC | Ngo9343ORF9505P |
| 9505 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo9343ORF9505P |
| 9510 | ribosome recycling factor | |||
| 10030 | IS5/IS1182 family transposase | |||
| 10040 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo9343ORF10045P |
| 10045 | M | M1.NgoFA19I (100% identity) | GGTGA | M1.Ngo9343ORF10045P |
| 10050 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo9343ORF10045P |
| 10055 | RNA-binding transcriptional accessory protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5050 | tRNA pseudouridine(55) synthase TruB | |||
| 5055 | M | M.Ngo10704ORF5060P (100% identity) | ACACC | M.Ngo9343ORF5055P |
| 5060 | R | NgoFA19ORF379P (100% identity) | ACACC | Ngo9343ORF5055P |
| 5065 | alpha-hydroxy-acid oxidizing protein | |||
| 5515 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5520 | R | Ngos1291ORF8455P (100% identity) | CCACC | Ngo9343ORF5525P |
| 5525 | M | M.Ngo12700III (97% identity) | CCACC | M.Ngo9343ORF5525P |
| 5530 | peptidylprolyl isomerase | |||