Neisseria gonorrhoeae 10296 |
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Putative Neisseria gonorrhoeae 10296 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,216,240 bp
GenBank #: CP098544
REBASE acronym: Ngo10296
Org_num: 61754
All begin NDQ64_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2365 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2370 | M | M.NgoSH240ORFMP (100% identity) | GCANNNNNNNGTC | M.Ngo10296ORF2370P |
| 2375 | DNA damage-inducible protein D | |||
| ??? | S | S.NgoJH16ORFHP (100% identity) | GCANNNNNNNGTC | S.Ngo10296ORF2370P |
| 2390 | R | NgoNCORF566P (99% identity) | GCANNNNNNNGTC | Ngo10296ORF2370P |
| 2395 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3865 | replication-associated recombination protein A | |||
| 3870 | R | NgoWNIP (99% identity) | GAGNNNNNTAC | Ngo10296ORF3895P |
| 3875 | hydroxyacid dehydrogenase | |||
| 3880 | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.Ngo10296ORF3895P |
| 3885 | 186 aa hypothetical protein | |||
| 3890 | 280 aa hypothetical protein | |||
| 3895 | M | M.NgoSW0002ORF3605P (99% identity) | GAGNNNNNTAC | M.Ngo10296ORF3895P |
| 3900 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo10296ORF40P |
| 40 | M | M.NgoWPORF8P (93% identity) | GATC | M.Ngo10296ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1220 | 62 aa hypothetical protein | |||
| 1225 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo10296ORF1225P |
| 1230 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo10296ORF1225P |
| 1235 | excinuclease ABC subunit UvrA | |||
| 1840 | phenylalanine--tRNA ligase subunit alpha | |||
| 1845 | V | V.NgoWSORF391P (100% identity) | V.Ngo10296ORF1850P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo10296ORF1850P |
| 1860 | R | NgoWSORF391P (100% identity) | CCGG | Ngo10296ORF1850P |
| 1865 | phenylalanine--tRNA ligase subunit beta | |||
| 2135 | N-6 DNA methylase | |||
| 2140 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo10296ORF2140P |
| 2145 | 140 aa hypothetical protein | |||
| 2165 | uroporphyrinogen decarboxylase | |||
| 2170 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo10296ORF2180P | |
| 2175 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo10296ORF2180P |
| 2180 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo10296ORF2180P |
| 2185 | DNA repair protein RadA | |||
| 3750 | 3-isopropylmalate dehydrogenase | |||
| 3755 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo10296ORF3760P |
| 3760 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo10296ORF3760P |
| 3765 | 3-isopropylmalate dehydratase small subunit | |||
| 5060 | anthranilate synthase component I | |||
| 5065 | M | M.Ngos1291ORF10080P (100% identity) | GCCGGC | M.Ngo10296ORF5065P |
| 5070 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo10296ORF5065P |
| 5075 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 8335 | replication initiation factor domain-containing | |||
| 8340 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo10296ORF8355P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo10296ORF8355P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo10296ORF8355P |
| 8365 | 48 aa hypothetical protein | |||
| 9670 | cysteine--tRNA ligase | |||
| 9675 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo10296ORF9680P |
| 9680 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo10296ORF9680P |
| 9685 | GTPase ObgE | |||
| 10205 | RNA-binding transcriptional accessory protein | |||
| 10210 | M | M1.NgoWSIII (100% identity) | GGTGA | M1.Ngo10296ORF10210P |
| 10215 | M | M1.Ngos1291II (100% identity) | GGTGA | M2.Ngo10296ORF10210P |
| 10220 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo10296ORF10210P |
| 10225 | 93 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3095 | peptidylprolyl isomerase | |||
| 3100 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo10296ORF3100P | |
| 3105 | R | NgoWPIIP (100% identity) | Ngo10296ORF3100P | |
| 3110 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3565 | alpha-hydroxy-acid oxidizing protein | |||
| 3570 | R | NgoNCORF1272P (100% identity) | GCAGA | Ngo10296ORF3575P |
| 3575 | M | M.Ngo56ORF11615P (100% identity) | GCAGA | M.Ngo10296ORF3575P |
| 3580 | tRNA pseudouridine(55) synthase TruB | |||