Neisseria gonorrhoeae ATCC 49226 |
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Putative Neisseria gonorrhoeae ATCC 49226 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,162,630 bp
GenBank #: CP098538
REBASE acronym: Ngo49226a
Org_num: 61770
All begin NDQ65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2055 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2060 | M | M.NgoFA19ORF148P (100% identity) | GCANNNNNNGTC | M.Ngo49226aORF2060P |
| 2065 | DNA damage-inducible protein D | |||
| 2070 | S | S.NgoWMII (100% identity) | GCANNNNNNGTC | S.Ngo49226aORF2060P |
| 2075 | R | NgoWNIIP (100% identity) | GCANNNNNNGTC | Ngo49226aORF2060P |
| 2080 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4460 | ABC transporter | |||
| 4465 | M | M.Ngo49226ORF3575P (100% identity) | GAGNNNNNTAC | M.Ngo49226aORF4465P |
| 4470 | 279 aa hypothetical protein | |||
| 4475 | 186 aa hypothetical protein | |||
| 4480 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo49226aORF4465P |
| 4485 | hydroxyacid dehydrogenase | |||
| 4490 | R | Ngos1291IP (100% identity) | GAGNNNNNTAC | Ngo49226aORF4465P |
| 4495 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1520 | phenylalanine--tRNA ligase subunit alpha | |||
| 1525 | V | V.NgoWSORF391P (100% identity) | V.Ngo49226aORF1530P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo49226aORF1530P |
| 1540 | R | NgoWSORF391P (100% identity) | CCGG | Ngo49226aORF1530P |
| 1545 | phenylalanine--tRNA ligase subunit beta | |||
| 1820 | N-6 DNA methylase | |||
| 1825 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.Ngo49226aORF1825P |
| 1830 | 140 aa hypothetical protein | |||
| 1850 | uroporphyrinogen decarboxylase | |||
| 1855 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo49226aORF1865P | |
| 1860 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo49226aORF1865P |
| 1865 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo49226aORF1865P |
| ??? | 87 aa hypothetical protein | |||
| 3620 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3625 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo49226aORF3630P |
| 3630 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo49226aORF3630P |
| 3635 | anthranilate synthase component I | |||
| 4590 | 3-isopropylmalate dehydratase small subunit | |||
| 4595 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo49226aORF4595P |
| 4600 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo49226aORF4595P |
| 4605 | 3-isopropylmalate dehydrogenase | |||
| 5750 | 93 aa hypothetical protein | |||
| 5755 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo49226aORF5770P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo49226aORF5770P |
| ??? | M | M.NgoN160ORF5915P (100% identity) | CCGG | M.Ngo49226aORF5770P |
| 5780 | type IV pilin protein | |||
| 9240 | FUSC family protein | |||
| 9245 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo49226aORF9250P |
| 9250 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo49226aORF9250P |
| 9255 | ribosome recycling factor | |||
| 9790 | 93 aa hypothetical protein | |||
| 9795 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo49226aORF9800P |
| 9800 | M | M1.NgoFA19I (100% identity) | GGTGA | M1.Ngo49226aORF9800P |
| 9805 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo49226aORF9800P |
| 9810 | RNA-binding transcriptional accessory protein | |||
| 10350 | GTPase ObgE | |||
| 10355 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo49226aORF10355P |
| 10360 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo49226aORF10355P |
| 10365 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4770 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.Ngo12700ORF968P (100% identity) | GCAGA | M.Ngo49226aORF4775P |
| 4785 | R | NgoWLORF910P (100% identity) | GCAGA | Ngo49226aORF4775P |
| 4790 | alpha-hydroxy-acid oxidizing protein | |||
| 5240 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5245 | R | Ngos1291ORF8455P (100% identity) | CCACC | Ngo49226aORF5250P |
| 5250 | M | M.Ngo12700III (95% identity) | CCACC | M.Ngo49226aORF5250P |
| 5255 | peptidylprolyl isomerase | |||