Neisseria gonorrhoeae 10612 |
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Putative Neisseria gonorrhoeae 10612 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,220,997 bp
GenBank #: CP098472
REBASE acronym: Ngo10612
Org_num: 61760
All begin NC855_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2040 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2045 | M | M.NgoFA19ORF148P (100% identity) | M.Ngo10612ORF2045P | |
| 2050 | DNA damage-inducible protein D | |||
| 2055 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.Ngo10612ORF2045P |
| 2060 | S | S2.NgoN160ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.Ngo10612ORF2045P |
| 2065 | R | Ngo9399ORF2075P (100% identity) | Ngo10612ORF2045P | |
| 2070 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4740 | ABC transporter | |||
| 4745 | M | M.NgoPID1ORF461P (100% identity) | GAGNNNNNTAC | M.Ngo10612ORF4745P |
| 4750 | 280 aa hypothetical protein | |||
| 4755 | 186 aa hypothetical protein | |||
| 4760 | S | S.Ngos1291I (100% identity) | GAGNNNNNTAC | S.Ngo10612ORF4745P |
| 4765 | hydroxyacid dehydrogenase | |||
| 4770 | R | NgoPID1ORF461P (99% identity) | GAGNNNNNTAC | Ngo10612ORF4745P |
| 4775 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo10612ORF40P |
| ??? | M | M.NgoWSORF8P (100% identity) | GATC | M.Ngo10612ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1515 | phenylalanine--tRNA ligase subunit alpha | |||
| 1520 | V | V.NgoWSORF391P (100% identity) | V.Ngo10612ORF1525P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo10612ORF1525P |
| 1535 | R | Ngo9399ORF1545P (100% identity) | CCGG | Ngo10612ORF1525P |
| 1540 | phenylalanine--tRNA ligase subunit beta | |||
| 1810 | N-6 DNA methylase | |||
| 1815 | S | S.NgoFA19ORF100P (100% identity) | GACNNNNNTGA | S.Ngo10612ORF1815P |
| 1820 | 140 aa hypothetical protein | |||
| 1840 | uroporphyrinogen decarboxylase | |||
| 1845 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo10612ORF1855P | |
| 1850 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo10612ORF1855P |
| 1855 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo10612ORF1855P |
| 1860 | DNA repair protein RadA | |||
| 3575 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3580 | R | NgoFQ01ORF4235P (100% identity) | GCCGGC | Ngo10612ORF3585P |
| 3585 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo10612ORF3585P |
| 3590 | anthranilate synthase component I | |||
| 4865 | 3-isopropylmalate dehydratase small subunit | |||
| 4870 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo10612ORF4870P |
| 4875 | R | Ngos1291ORF9120P (100% identity) | GGNNCC | Ngo10612ORF4870P |
| 4880 | 3-isopropylmalate dehydrogenase | |||
| 7925 | replication initiation factor domain-containing | |||
| 7930 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo10612ORF7945P | |
| ??? | R | Ngos1291ORF65P (100% identity) | CCGG | Ngo10612ORF7945P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo10612ORF7945P |
| 7955 | 48 aa hypothetical protein | |||
| 9440 | FUSC family protein | |||
| ??? | R | NgoWFORF2088P (100% identity) | GGCC | Ngo10612ORF9455P |
| 9455 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo10612ORF9455P |
| 9460 | ribosome recycling factor | |||
| 9975 | IS5/IS1182 family transposase | |||
| 9985 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo10612ORF9990P |
| 9990 | M | M1.NgoFA19I (100% identity) | GGTGA | M1.Ngo10612ORF9990P |
| 9995 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.Ngo10612ORF9990P |
| 10000 | RNA-binding transcriptional accessory protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5045 | tRNA pseudouridine(55) synthase TruB | |||
| 5050 | M | M.NgoWSORF749P (21% identity) | M.Ngo10612ORF5050AP | |
| 5055 | M | M.Ngo9126ORF3235BP (99% identity) | M.Ngo10612ORF5050BP | |
| 5060 | R | NgoFA19ORF379P (100% identity) | Ngo10612ORF5050P | |
| 5065 | alpha-hydroxy-acid oxidizing protein | |||
| 5515 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5520 | R | Ngo10704ORF5530P (100% identity) | Ngo10612ORF5525P | |
| 5525 | M | M.NgoHL122ORF2795P (100% identity) | M.Ngo10612ORF5525P | |
| 5530 | peptidylprolyl isomerase | |||