Neisseria gonorrhoeae 9458 |
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Putative Neisseria gonorrhoeae 9458 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,233,050 bp
GenBank #: CP098476
REBASE acronym: Ngo9458
Org_num: 61768
All begin NC850_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2085 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2090 | M | M.Ngos1291ORF7750P (100% identity) | GCANNNNNNNGTC | M.Ngo9458ORF2090P |
| 2095 | DNA damage-inducible protein D | |||
| 2100 | S | S.Ngo23ORFDP (100% identity) | GCANNNNNNNGTC | S.Ngo9458ORF2090P |
| 2105 | R | NgoN160ORF2075P (100% identity) | GCANNNNNNNGTC | Ngo9458ORF2090P |
| 2110 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4860 | ABC transporter | |||
| 4865 | M | M.Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | M.Ngo9458ORF4865P |
| 4870 | 217 aa hypothetical protein | |||
| 4875 | 199 aa hypothetical protein | |||
| 4880 | S | S.Ngo23ORFFP (100% identity) | GAGNNNNNTAC | S.Ngo9458ORF4865P |
| 4885 | hydroxyacid dehydrogenase | |||
| 4890 | R | Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | Ngo9458ORF4865P |
| 4895 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | M | M1.Ngo9464ORF35P (100% identity) | GATC | M1.Ngo9458ORF35P |
| 40 | M | M2.Ngo9464ORF35P (100% identity) | GATC | M2.Ngo9458ORF35P |
| 45 | 184 aa hypothetical protein | |||
| 1560 | phenylalanine--tRNA ligase subunit alpha | |||
| 1565 | V | V.NgoWSORF391P (100% identity) | V.Ngo9458ORF1570P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo9458ORF1570P |
| 1580 | R | NgoWSORF391P (100% identity) | CCGG | Ngo9458ORF1570P |
| 1585 | phenylalanine--tRNA ligase subunit beta | |||
| 1855 | N-6 DNA methylase | |||
| 1860 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.Ngo9458ORF1860P |
| 1865 | 140 aa hypothetical protein | |||
| 1885 | uroporphyrinogen decarboxylase | |||
| 1890 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo9458ORF1900P | |
| 1895 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo9458ORF1900P |
| 1900 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo9458ORF1900P |
| 1905 | DNA repair protein RadA | |||
| 3655 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3660 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo9458ORF3665P |
| 3665 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo9458ORF3665P |
| 3670 | anthranilate synthase component I | |||
| 4990 | 3-isopropylmalate dehydratase small subunit | |||
| 4995 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo9458ORF4995P |
| 5000 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo9458ORF4995P |
| 5005 | 3-isopropylmalate dehydrogenase | |||
| 6150 | replication initiation factor domain-containing | |||
| 6155 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo9458ORF6170P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo9458ORF6170P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo9458ORF6170P |
| 6180 | 48 aa hypothetical protein | |||
| 6375 | excinuclease ABC subunit UvrA | |||
| 6380 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo9458ORF6385P |
| 6385 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo9458ORF6385P |
| 6390 | 62 aa hypothetical protein | |||
| 10360 | RNA-binding transcriptional accessory protein | |||
| 10365 | M | M2.Ngos1291II (100% identity) | GGTGA | M1.Ngo9458ORF10365P |
| 10370 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M2.Ngo9458ORF10365P |
| 10375 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo9458ORF10365P |
| 10380 | 93 aa hypothetical protein | |||
| 10930 | ribosome recycling factor | |||
| 10935 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo9458ORF10935P |
| 10940 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo9458ORF10935P |
| 10945 | FUSC family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5175 | tRNA pseudouridine(55) synthase TruB | |||
| ??? | M | M.NgoFQ01ORF5835P (99% identity) | M.Ngo9458ORF5180P | |
| 5195 | R | Ngo9464ORF5170P (100% identity) | Ngo9458ORF5180P | |
| 5200 | alpha-hydroxy-acid oxidizing protein | |||
| 5655 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5660 | R | Ngos1291ORF8455P (100% identity) | CCACC | Ngo9458ORF5665P |
| 5665 | M | M.Ngo10743ORF2670P (100% identity) | CCACC | M.Ngo9458ORF5665P |
| 5670 | peptidylprolyl isomerase | |||