Neisseria gonorrhoeae 9460 |
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Putative Neisseria gonorrhoeae 9460 RM systems
Ref: Shaskolskiy,B. and Kandinov,I. unpublished
REBASE ref # 35250
Complete sequence: 2,228,516 bp
GenBank #: CP098462
REBASE acronym: Ngo9460
Org_num: 61769
All begin NC849_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2070 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2075 | M | M.Ngos1291ORF7750P (100% identity) | GCANNNNNNNGTC | M.Ngo9460ORF2075P |
| 2080 | DNA damage-inducible protein D | |||
| 2085 | S | S.Ngo19853ORF11850P (100% identity) | GCANNNNNNNGTC | S.Ngo9460ORF2075P |
| 2090 | R | NgoN160ORF2075P (100% identity) | GCANNNNNNNGTC | Ngo9460ORF2075P |
| 2095 | ATP-dependent Clp protease ATP-binding subunit | |||
| 4825 | ABC transporter | |||
| 4830 | M | M.Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | M.Ngo9460ORF4830P |
| 4835 | 280 aa hypothetical protein | |||
| 4840 | 186 aa hypothetical protein | |||
| 4845 | S | S.Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | S.Ngo9460ORF4830P |
| 4850 | hydroxyacid dehydrogenase | |||
| 4855 | R | Ngo9464ORF4845P (100% identity) | GAGNNNNNTAC | Ngo9460ORF4830P |
| 4860 | replication-associated recombination protein A | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | M | M1.Ngo9464ORF35P (100% identity) | GATC | M1.Ngo9460ORF35P |
| 40 | M | M2.Ngo9464ORF35P (100% identity) | GATC | M2.Ngo9460ORF35P |
| 45 | 184 aa hypothetical protein | |||
| 1545 | phenylalanine--tRNA ligase subunit alpha | |||
| 1550 | V | V.NgoWSORF391P (100% identity) | V.Ngo9460ORF1555P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo9460ORF1555P |
| 1565 | R | NgoWSORF391P (100% identity) | CCGG | Ngo9460ORF1555P |
| 1570 | phenylalanine--tRNA ligase subunit beta | |||
| 1840 | N-6 DNA methylase | |||
| 1845 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.Ngo9460ORF1845P |
| 1850 | 140 aa hypothetical protein | |||
| 1870 | uroporphyrinogen decarboxylase | |||
| 1875 | H | H.NgoN160ORF1885P (100% identity) | H.Ngo9460ORF1885P | |
| 1880 | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo9460ORF1885P |
| 1885 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo9460ORF1885P |
| 1890 | DNA repair protein RadA | |||
| 3630 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 3635 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo9460ORF3640P |
| 3640 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo9460ORF3640P |
| 3645 | anthranilate synthase component I | |||
| 4960 | 3-isopropylmalate dehydratase small subunit | |||
| 4965 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo9460ORF4965P |
| 4970 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo9460ORF4965P |
| 4975 | 3-isopropylmalate dehydrogenase | |||
| 6110 | replication initiation factor domain-containing | |||
| 6115 | V | V.Ngos1291ORF65P (100% identity) | V.Ngo9460ORF6130P | |
| ??? | R | NgoWSORF1801P (100% identity) | CCGG | Ngo9460ORF6130P |
| ??? | M | M.NgoSH240ORFLP (100% identity) | CCGG | M.Ngo9460ORF6130P |
| 6140 | 48 aa hypothetical protein | |||
| 6330 | excinuclease ABC subunit UvrA | |||
| 6335 | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo9460ORF6340P |
| 6340 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo9460ORF6340P |
| 6345 | 62 aa hypothetical protein | |||
| 10300 | RNA-binding transcriptional accessory protein | |||
| 10305 | M | M2.Ngos1291II (100% identity) | GGTGA | M1.Ngo9460ORF10305P |
| 10310 | M | M1.NgoFQ35ORF11380P (100% identity) | GGTGA | M2.Ngo9460ORF10305P |
| 10315 | R | NgoWSIIIP (100% identity) | GGTGA | Ngo9460ORF10305P |
| 10320 | 93 aa hypothetical protein | |||
| 10875 | ribosome recycling factor | |||
| 10880 | M | M.Ngo9431ORF10975P (100% identity) | GGCC | M.Ngo9460ORF10880P |
| 10885 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo9460ORF10880P |
| 10890 | FUSC family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5145 | tRNA pseudouridine(55) synthase TruB | |||
| 5150 | M | M.NgoCT532ORF3190P (21% identity) | M1.Ngo9460ORF5150AP | |
| 5155 | M | M.NgoSW0259ORF3235P (26% identity) | M1.Ngo9460ORF5150BP | |
| 5160 | M | M.NgoJH8ORFHP (100% identity) | M2.Ngo9460ORF5150P | |
| 5165 | R | Ngo9464ORF5170P (100% identity) | Ngo9460ORF5150P | |
| 5170 | alpha-hydroxy-acid oxidizing protein | |||
| 5620 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 5625 | R | Ngos1291ORF8455P (100% identity) | CCACC | Ngo9460ORF5630P |
| 5630 | M | M.NgoWFI (100% identity) | CCACC | M.Ngo9460ORF5630P |
| 5635 | peptidylprolyl isomerase | |||