[Ruminococcus] lactaris ATCC 29176 |
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Putative [Ruminococcus] lactaris ATCC 29176 RM systems
Ref: Cheng,A.G. et al. unpublished
REBASE ref # 35114
Complete sequence: 2,733,858 bp
GenBank #: CP102292
REBASE acronym: Rla29176
Org_num: 61196
All begin NQ541_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11440 | site-specific integrase | |||
| 11445 | R | PmeBin391ORFAP (86% identity) | Rla29176ORF11465P | |
| 11450 | 149 aa hypothetical protein | |||
| 11455 | DUF3990 domain-containing protein | |||
| 11460 | S | S2.Cdi21266ORFCP (77% identity) | S.Rla29176ORF11465P | |
| 11465 | M | M.RlaORF744P (100% identity) | M.Rla29176ORF11465P | |
| 11470 | WYL domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 810 | virulence RhuM family protein | |||
| 815 | M | M.RlaORF1538P (100% identity) | GCGC | M.Rla29176ORF815P |
| 820 | sodium-dependent transporter | |||
| 6050 | DNA polymerase | |||
| 6055 | M | M.RlaORF2217P (100% identity) | CCGG | M.Rla29176ORF6055P |
| 6060 | PD-(D/E)XK motif protein | |||
| 6080 | Z1 domain-containing protein | |||
| 6085 | R | RlaI (100% identity) | VCW | Rla29176ORF6085P |
| 6090 | very short patch repair endonuclease | |||
| 10670 | NgoBV family restriction endonuclease | |||
| 10675 | R | RlaORF2666P (100% identity) | TGATCA | Rla29176ORF10685P |
| 10680 | C | C.RlaORF2666P (100% identity) | C.Rla29176ORF10685P | |
| 10685 | M | M.RlaORF2666P (100% identity) | TGATCA | M1.Rla29176ORF10685P |
| 10690 | M | M.Bsp15426ORF1680P (95% identity) | M2.Rla29176ORF10685P | |
| 10695 | TnpV protein | |||
| 11555 | AAA family ATPase | |||
| 11560 | RM | RlaORF14P (100% identity) | ACACAG | Rla29176ORF11560P |
| 11565 | recombinase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3310 | 476 aa hypothetical protein | |||
| 3315 | R | HpySG05GmrSDP (21% identity) | Rla29176GmrSDP | |
| 3320 | phage portal protein | |||