Roseburia intestinalis L1 82 |
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Putative Roseburia intestinalis L1 82 RM systems
Ref: Cheng,A.G. et al. unpublished
REBASE ref # 35114
Complete sequence: 4,482,541 bp
GenBank #: CP102289
REBASE acronym: Rin182
Org_num: 61923
All begin NQ522_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6300 | L-fucose/L-arabinose isomerase family protein | |||
| 6305 | C | C.RinL182ORF1268P (100% identity) | C.Rin182ORF6315P | |
| 6310 | R | RinL182ORF1268P (100% identity) | Rin182ORF6315P | |
| 6315 | M | M.RinL182ORF1268P (100% identity) | M.Rin182ORF6315P | |
| 6320 | S | S3.RinL182ORF1268P (52% identity) | S1.Rin182ORF6315P | |
| 6325 | tyrosine-type recombinase/integrase | |||
| 6330 | S | S2.RinL182ORF1268P (100% identity) | S2.Rin182ORF6315P | |
| 6335 | S | S3.RinL182ORF1268P (68% identity) | S3.Rin182ORF6315P | |
| 6340 | Abi family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | 101 aa hypothetical protein | |||
| 1760 | M | M.RinL182ORF353P (100% identity) | M.Rin182ORF1760P | |
| 1765 | ATP-binding protein | |||
| 2310 | DUF4314 domain-containing protein | |||
| 2315 | M | M.RinL182ORF465P (100% identity) | M.Rin182ORF2315P | |
| 2320 | 149 aa hypothetical protein | |||
| 2415 | DUF6045 family protein | |||
| 2420 | M | M.RinL182ORF486P (100% identity) | M.Rin182ORF2420P | |
| 2425 | 92 aa hypothetical protein | |||
| 3275 | 157 aa hypothetical protein | |||
| 3280 | R | RinLORF5004P (100% identity) | GGCC | Rin182ORF3285P |
| 3285 | M | M.RinLORF5004P (100% identity) | GGCC | M.Rin182ORF3285P |
| 3290 | nucleoid-associated protein | |||
| 5015 | sigma-70 family RNA polymerase sigma factor | |||
| 5020 | M | M.RinL182ORF1004P (100% identity) | M.Rin182ORF5020P | |
| 5025 | SprT-like domain-containing protein | |||
| 5100 | DNA cytosine methyltransferase | |||
| 5105 | M | M.RinL182ORF1022P (100% identity) | M.Rin182ORF5105P | |
| 5110 | spore cortex-lytic protein | |||
| 11320 | 85 aa hypothetical protein | |||
| 11325 | M | M.RinL182ORF2257P (96% identity) | M.Rin182ORF11325P | |
| 11330 | DUF4393 domain-containing protein | |||
| 12225 | ATP-binding protein | |||
| 12230 | M | M.RinL182ORF2436P (100% identity) | M.Rin182ORF12230P | |
| 12235 | CHAP domain-containing protein | |||
| 19170 | pyridoxamine 5-phosphate oxidase family | |||
| 19175 | RM | RinL182ORF3840P (100% identity) | Rin182ORF19175P | |
| 19180 | IS110 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14870 | (deoxy)nucleoside triphosphate | |||
| 14875 | R | RinLORF6814P (100% identity) | Rin182ORF14875P | |
| 14880 | NADP-dependent malic enzyme | |||