Prevotella copri DSM 18205 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Prevotella copri DSM 18205 RM systems
Ref: Cheng,A.G. et al. unpublished
REBASE ref # 35114
Complete sequence: 3,325,514 bp
GenBank #: CP102288
REBASE acronym: Pco18205
Org_num: 61845
All begin NQ544_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6525 | 454 aa hypothetical protein | |||
| 6530 | R | PcoORF4773P (100% identity) | Pco18205ORF6540P | |
| 6535 | S | S.PcoORF4773P (100% identity) | S.Pco18205ORF6540P | |
| 6540 | M | M.PcoORF4773P (100% identity) | M.Pco18205ORF6540P | |
| 6545 | 129 aa hypothetical protein | |||
| 9080 | 104 aa hypothetical protein | |||
| 9085 | S | S1.PcoORF5694P (98% identity) | S3.Pco18205ORF9105P | |
| 9090 | tyrosine-type recombinase/integrase | |||
| 9095 | S | S2.PcoORF5694P (100% identity) | S2.Pco18205ORF9105P | |
| 9100 | S | S3.PcoORF5694P (100% identity) | S1.Pco18205ORF9105P | |
| 9105 | M | M.PcoORF5694P (100% identity) | M.Pco18205ORF9105P | |
| 9110 | R | PcoORF5694P (100% identity) | Pco18205ORF9105P | |
| 9115 | 111 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2325 | 47 aa hypothetical protein | |||
| 2330 | M | M.PcoORF4317P (100% identity) | M.Pco18205ORF2330P | |
| 2335 | R | PcoORF4317P (100% identity) | Pco18205ORF2330P | |
| 2340 | DUF5640 domain-containing protein | |||
| 2930 | 76 aa hypothetical protein | |||
| 2935 | RM | PcoORF4179P (99% identity) | Pco18205ORF2935P | |
| 2940 | DEAD/DEAH box helicase family protein | |||
| 3440 | 45 aa hypothetical protein | |||
| 3445 | C | C.PcoORF4066P (100% identity) | C.Pco18205ORF3450P | |
| 3450 | M | M2.PcoORF4066P (100% identity) | M1.Pco18205ORF3450P | |
| 3455 | M | M1.PcoORF4066P (100% identity) | M2.Pco18205ORF3450P | |
| 3460 | R | PcoORF4066P (100% identity) | Pco18205ORF3450P | |
| 3465 | DUF2442 domain-containing protein | |||
| 3700 | 152 aa hypothetical protein | |||
| 3705 | M | M.Pca1573ORF10315P (100% identity) | M.Pco18205ORF3705P | |
| 3710 | 251 aa hypothetical protein | |||
| 4690 | restriction endonuclease subunit M | |||
| 4695 | RM | PcoORF3780BP (100% identity) | Pco18205ORF4695P | |
| 4700 | DUF6078 family protein | |||
| 5715 | 146 aa hypothetical protein | |||
| 5720 | RM | PcoORF6612P (100% identity) | Pco18205ORF5720P | |
| 5725 | M | M1.PcoORF6613P (100% identity) | M2.Pco18205ORF5720P | |
| 5730 | M | M2.PcoORF6613P (97% identity) | M1.Pco18205ORF5720P | |
| 5735 | Fic family protein | |||
| 6580 | HNH endonuclease | |||
| 6585 | R | PcoORF4762P (100% identity) | Pco18205ORF6590P | |
| 6590 | M | M.PcoORF4762P (100% identity) | M.Pco18205ORF6590P | |
| 6595 | YkvA family protein | |||
| 7205 | PDDEXK nuclease domain-containing protein | |||
| 7210 | V | V.PhoHDD12ORF7035P (81% identity) | V.Pco18205ORF7250P | |
| 7215 | helix-turn-helix domain-containing protein | |||
| 7220 | type II toxin-antitoxin system HigB family | |||
| 7225 | AAA family ATPase | |||
| 7230 | 40 aa hypothetical protein | |||
| 7235 | restriction endonuclease | |||
| 7240 | R | PcoORFCP (48% identity) | Pco18205ORF7250P | |
| 7245 | 183 aa hypothetical protein | |||
| 7250 | M | M.PcoORFBP (100% identity) | M.Pco18205ORF7250P | |
| 7255 | DEAD/DEAH box helicase family protein | |||
| 8180 | DNA-binding protein | |||
| 8185 | R | PcoORF4391P (100% identity) | Pco18205ORF8200P | |
| 8190 | 144 aa hypothetical protein | |||
| 8195 | phospholipase D family protein | |||
| 8200 | M | M.PcoORF4391P (100% identity) | M.Pco18205ORF8200P | |
| 8205 | site-specific DNA-methyltransferase | |||
| 8585 | GIY-YIG nuclease family protein | |||
| 8590 | RM | PcoI (100% identity) | GAACNNNNNNTCC | Pco18205ORF8590P |
| 8595 | Rpn family recombination-promoting | |||
| 9170 | helix-turn-helix transcriptional regulator | |||
| 9175 | R | PcoORF6850P (100% identity) | Pco18205ORF9180P | |
| 9180 | M | M.PcoORF6850P (100% identity) | M.Pco18205ORF9180P | |
| 9185 | C | C.PcoORF6850P (100% identity) | C.Pco18205ORF9180P | |
| 9190 | IS982 family transposase | |||
| 9645 | transposase | |||
| 9650 | M | M.PcoORF6737P (100% identity) | M.Pco18205ORF9650P | |
| 9655 | R | PcoORF6737P (100% identity) | Pco18205ORF9650P | |
| 9660 | DUF4143 domain-containing protein | |||
| 9720 | 172 aa hypothetical protein | |||
| 9725 | R | PcoORF314P (100% identity) | Pco18205ORF9725P | |
| 9730 | 266 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2015 | SNF2-related protein | |||
| 2020 | M | M.PcoORF3677P (100% identity) | M.Pco18205ORF2020P | |
| 2025 | R | PcoORF3677P (100% identity) | Pco18205ORF2020P | |
| 2030 | DUF86 domain-containing protein | |||
| 4270 | ATP-binding protein | |||
| 4275 | R | PcoORF3884P (100% identity) | Pco18205ORF4280P | |
| 4280 | M | M.PcoORF3884P (100% identity) | M.Pco18205ORF4280P | |
| 4285 | 70 aa hypothetical protein | |||
| 6770 | 44 aa hypothetical protein | |||
| 6775 | M | M.PcoORF4722P (100% identity) | M.Pco18205ORF6775P | |
| 6780 | R | PcoORF4722P (100% identity) | Pco18205ORF6775P | |
| 6785 | helicase-related protein | |||
| 8200 | DNA adenine methylase | |||
| 8205 | M | M.PcoORF4390P (100% identity) | M.Pco18205ORF8205P | |
| 8210 | 275 aa hypothetical protein | |||
| 8280 | 63 aa hypothetical protein | |||
| 8290 | R | PcoORF4371P (100% identity) | Pco18205ORF8295P | |
| 8295 | M | M.PcoORF4371P (100% identity) | M.Pco18205ORF8295P | |
| 8300 | 393 aa hypothetical protein | |||
| 8785 | 71 aa hypothetical protein | |||
| 8790 | R | PcoORF5622P (100% identity) | Pco18205ORF8795P | |
| 8795 | M | M.PcoORF5622P (97% identity) | M.Pco18205ORF8795P | |
| 8800 | 93 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2775 | PDDEXK nuclease domain-containing protein | |||
| 2780 | R | Pca1573McrBP (90% identity) | Pco18205McrB4P | |
| 2785 | R | Pca1573McrCP (100% identity) | Pco18205McrC4P | |
| 2790 | excinuclease ABC subunit UvrA | |||
| 4725 | R | PcoMcrBP (100% identity) | Pco18205McrB3P | |
| 4730 | R | PcoMcrCP (100% identity) | Pco18205McrC3P | |
| 4735 | 55 aa hypothetical protein | |||
| 6505 | 155 aa hypothetical protein | |||
| 6510 | R | PcoMcrB3P (100% identity) | Pco18205McrB2P | |
| 6515 | R | PcoMcrC3P (100% identity) | Pco18205McrC2P | |
| 6520 | transposase | |||