Phocaeicola dorei DSM 17855 |
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Putative Phocaeicola dorei DSM 17855 RM systems
Ref: Cheng,A.G. et al. unpublished
REBASE ref # 35114
Complete sequence: 5,625,379 bp
GenBank #: CP102257
REBASE acronym: Pdo17855
Org_num: 61838
All begin NQ486_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1700 | S-adenosylmethionine:tRNA | |||
| 1705 | M | M.Pdo3716YORF6360P (100% identity) | M.Pdo17855ORF1705P | |
| 1710 | S | S1.Bdo17855IV (100% identity) | CAAYNNNNNNNTGAY | S1.Pdo17855ORF1705P |
| 1715 | S | S2.Pdo2ORF20950P (100% identity) | S2.Pdo17855ORF1705P | |
| 1720 | R | Pdo1051IIP (100% identity) | Pdo17855ORF1705P | |
| 1725 | WYL domain-containing protein | |||
| 16750 | 44 aa hypothetical protein | |||
| 16755 | S | S1.Bsp3140ORF1663P (100% identity) | S2.Pdo17855ORF16765P | |
| 16760 | S | S1.Pvu1099ORF215P (100% identity) | S1.Pdo17855ORF16765P | |
| 16765 | M | M.BvumpkORF1055P (100% identity) | M.Pdo17855ORF16765P | |
| 16770 | DUF2971 domain-containing protein | |||
| 16775 | C | C.Pvu1099ORF215P (100% identity) | C.Pdo17855ORF16765P | |
| 16780 | transposase | |||
| 20235 | site-specific integrase | |||
| 20240 | S | S.Bdo17855ORF13460P (95% identity) | S6.Pdo17855ORF20280P | |
| 20245 | S | S4.Mba13079ORFCP (27% identity) | S5.Pdo17855ORF20280P | |
| 20250 | S | S1.Bsp163ORFCP (36% identity) | S4.Pdo17855ORF20280P | |
| 20255 | S | S3.BspD2aORF12550P (83% identity) | S3.Pdo17855ORF20280P | |
| 20260 | 181 aa hypothetical protein | |||
| 20265 | S | S1.Bfr9343IV (17% identity) | S2.Pdo17855ORF20280P | |
| 20270 | S | S.Bdo17855III (99% identity) | CCAYNNNNNNTGA | S1.Pdo17855ORF20280P |
| 20275 | virulence RhuM family protein | |||
| 20280 | M | M.Bdo17855III (100% identity) | M.Pdo17855ORF20280P | |
| 20285 | DUF5655 domain-containing protein | |||
| 20290 | R | Bdo17855IIIP (100% identity) | R1.Pdo17855ORF20280P | |
| 20295 | helix-turn-helix transcriptional regulator | |||
| 20300 | 249 aa hypothetical protein | |||
| 20305 | DUF3696 domain-containing protein | |||
| 20310 | DUF262 domain-containing protein | |||
| 20315 | ATP-binding protein | |||
| 20320 | helix-turn-helix domain-containing protein | |||
| 20325 | 516 aa hypothetical protein | |||
| 20330 | 340 aa hypothetical protein | |||
| 20335 | 331 aa hypothetical protein | |||
| 20340 | 47 aa hypothetical protein | |||
| 20345 | helix-turn-helix domain-containing protein | |||
| 20350 | R | Bvi23226ORF11065P (84% identity) | R2.Pdo17855ORF20280P | |
| 20355 | GIY-YIG nuclease family protein | |||
| 20360 | C | C.Pme12C32ORF2707P (76% identity) | C.Pdo17855ORF20280P | |
| 20365 | 189 aa hypothetical protein | |||
| 22850 | fimbrillin family protein | |||
| 22855 | S | S3.Bdo17855IIP (100% identity) | S5.Pdo17855ORF22875P | |
| ??? | S | S2.BdoB079ORF22155P (100% identity) | GAAGNNNNNNNTGG | S4.Pdo17855ORF22875P |
| ??? | S | S3.Pvu201ORF22395P (62% identity) | S3.Pdo17855ORF22875P | |
| 22865 | S | S2.Bdo17855II (100% identity) | GAAGNNNNNNNTGG | S2.Pdo17855ORF22875P |
| 22870 | S | S1.Pdo3716YORF13100P (100% identity) | S1.Pdo17855ORF22875P | |
| 22875 | M | M.PmeBin22ORFGP (100% identity) | M.Pdo17855ORF22875P | |
| 22880 | R | PmeBin22ORFGP (100% identity) | Pdo17855ORF22875P | |
| 22885 | C | C.Pvu201ORF22395P (100% identity) | C.Pdo17855ORF22875P | |
| 22890 | GIY-YIG nuclease family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10380 | 458 aa hypothetical protein | |||
| 10385 | M | M.Pvu626ORF9540P (100% identity) | M.Pdo17855ORF10385P | |
| 10390 | AAA family ATPase | |||
| 12360 | 120 aa hypothetical protein | |||
| 12365 | R | Bdo17855ORF5515P (100% identity) | Pdo17855ORF12370P | |
| 12370 | M | M.Bdo17855ORF5515P (96% identity) | M.Pdo17855ORF12370P | |
| 12375 | helix-turn-helix transcriptional regulator | |||
| 15130 | transcriptional regulator | |||
| 15135 | R | Bdo17855IP (100% identity) | GGTNACC | Pdo17855ORF15140P |
| 15140 | M | M.Bdo17855I (100% identity) | GGTNACC | M.Pdo17855ORF15140P |
| 15145 | 104 aa hypothetical protein | |||
| 16645 | DUF4134 domain-containing protein | |||
| 16650 | M | M2.Pba22567ORF6655P (47% identity) | M.Pdo17855ORF16650P | |
| 16655 | DUF4133 domain-containing protein | |||
| 19005 | 318 aa hypothetical protein | |||
| 19010 | V | V.Bth3164ORF23180P (100% identity) | V.Pdo17855ORF19035P | |
| 19015 | AIPR family protein | |||
| 19020 | PD-(D/E)XK motif protein | |||
| 19025 | R | Bth3164ORF23180P (100% identity) | Pdo17855ORF19035P | |
| 19030 | ATP-binding protein | |||
| 19035 | M | M.Bth7330ORF2211P (100% identity) | M.Pdo17855ORF19035P | |
| 19040 | C | C.Bth7330ORF2211P (100% identity) | C.Pdo17855ORF19035P | |
| 19045 | DUF2958 domain-containing protein | |||
| 20520 | AraC family transcriptional regulator | |||
| 20525 | C | C.PmeBin22ORFDP (100% identity) | C.Pdo17855ORF20550P | |
| 20530 | PDDEXK nuclease domain-containing protein | |||
| 20535 | 366 aa hypothetical protein | |||
| 20540 | 504 aa hypothetical protein | |||
| 20545 | 543 aa hypothetical protein | |||
| 20550 | M | M.PmeBin22ORFDP (100% identity) | M.Pdo17855ORF20550P | |
| 20555 | plasmid recombination protein | |||