Clostridioides difficile DSM 104450 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridioides difficile DSM 104450 RM systems
Ref: Numberger,D. et al. Anaerobe 56, 22-26 (2019)
REBASE ref # 35149
Complete sequence: 4,229,131 bp
GenBank #: CP021445
REBASE acronym: Cdi104450
Org_num: 61394
All begin CDIF104450_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3292 | 687 aa hypothetical protein | |||
| 3293 | R | Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | Cdi104450ORF3298P |
| 3294 | 142 aa hypothetical protein | |||
| 3295 | DNA polymerase subunit beta | |||
| 3296 | 102 aa hypothetical protein | |||
| 3297 | S | S.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | S.Cdi104450ORF3298P |
| 3298 | M | M.Pdi6602ORF710241P (100% identity) | GCAYNNNNNNTTC | M.Cdi104450ORF3298P |
| 3299 | tagatose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1128 | 111 aa hypothetical protein | |||
| 1129 | M | M.PdiZ31ORF1645P (100% identity) | M.Cdi104450ORF1129P | |
| 1130 | 69 aa hypothetical protein | |||
| 1700 | 39 aa hypothetical protein | |||
| 1701 | M | M.CdiS0352ORF4245P (100% identity) | GATC | M.Cdi104450ORF1701P |
| 1702 | 65 aa hypothetical protein | |||
| 1933 | N-acetylmuramoyl-l-alanine amidase | |||
| 1934 | M | M.Pdi6602ORF250005P (100% identity) | CTSAG | M.Cdi104450ORF1934P |
| 1935 | two-component response regulator | |||
| 3034 | phospholipase | |||
| 3035 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi104450ORF3035P |
| 3036 | badm/rrf2 family transcriptional regulator | |||
| 3386 | 33 aa hypothetical protein | |||
| 3387 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi104450ORF3387P |
| 3388 | 872 aa hypothetical protein | |||
| 3575 | 76 aa hypothetical protein | |||
| 3576 | M | M.CdiRT010ORF11280P (100% identity) | M.Cdi104450ORF3576P | |
| 3577 | 111 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2334 | sigma-54-dependent transcriptional regulator | |||
| 2335 | R | Pdi6602McrCP (100% identity) | Cdi104450McrCP | |
| 2336 | R | Pdi6602McrBP (100% identity) | Cdi104450McrBP | |
| 2337 | cell division protein FtsZ | |||
| 3291 | integral membrane protein | |||
| 3292 | R | Pdi6602GmrSDP (100% identity) | Cdi104450GmrSDP | |
| 3293 | type i restriction enzyme r subunit | |||