Helicobacter suis HS1 |
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Putative Helicobacter suis HS1 RM systems
Ref: Suzuki,M. et al. unpublished
REBASE ref # 35201
| Sequence length: | GenBank #: | |
| Chromosome: | 1,689,191 bp | AP026769 |
| plasmid pHS_1: | 43,388 bp | AP026770 |
REBASE acronym: HsuHS1
Org_num: 61588
All begin HSHS1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5670 | 82 aa hypothetical protein | |||
| 5680 | S | S.Hsu4022ORF7850P (57% identity) | S2.HsuHS1ORF5700P | |
| 5690 | S | S.Hsu4022ORF7850P (31% identity) | S1.HsuHS1ORF5700P | |
| 5700 | M | M.Hsu4022ORF7850P (41% identity) | M.HsuHS1ORF5700BP | |
| 5710 | M | M.Hsu4022ORF7850P (53% identity) | M.HsuHS1ORF5700AP | |
| 5720 | S-ribosylhomocysteine lyase | |||
| 12570 | 900 aa hypothetical protein | |||
| 12580 | S | S.Hsu101ORFGP (100% identity) | S.HsuHS1ORF12580P | |
| 12590 | citrate transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1300 | 85 aa hypothetical protein | |||
| 1310 | M | M.Hsu0020ORF1190P (75% identity) | M.HsuHS1ORF1310P | |
| 1320 | 62 aa hypothetical protein | |||
| 1480 | selenocysteine-specific translation elongation | |||
| 1490 | M | M.Hsu4022ORF1360P (100% identity) | M.HsuHS1ORF1490P | |
| 1500 | 299 aa hypothetical protein | |||
| 1530 | glucose-6-phosphate isomerase | |||
| 1540 | RM | Hpy4004ORF1390P (63% identity) | HsuHS1ORF1540AP | |
| 1550 | RM | Hsu4022ORF1410P (33% identity) | HsuHS1ORF1540BP | |
| 1560 | 139 aa hypothetical protein | |||
| 2360 | 1-deoxy-D-xylulose-5-phosphate synthase | |||
| ??? | M | M.Hsu4022ORF2180P (82% identity) | M.HsuHS1ORF2370P | |
| 2380 | 436 aa hypothetical protein | |||
| 2440 | 93 aa hypothetical protein | |||
| ??? | M | M.Hsu0020ORF2900P (86% identity) | M.HsuHS1ORF2460P | |
| 2470 | phosphatidylglycerophosphatase A | |||
| 3080 | bifunctional NAD(P)H-hydrate repair enzyme Nnr | |||
| 3090 | M | M.Hsu4022ORF2850P (99% identity) | M.HsuHS1ORF3090P | |
| 3100 | R | Hsu101cORF2840P (98% identity) | HsuHS1ORF3090P | |
| 3110 | 256 aa hypothetical protein | |||
| 3720 | 193 aa hypothetical protein | |||
| 3730 | M | M.Hsu4022ORF15950P (100% identity) | CCGG | M.HsuHS1ORF3730P |
| 3740 | fumarate hydratase class II | |||
| 4810 | 39 aa hypothetical protein | |||
| 4820 | M | M.Hsu4022ORF4040P (100% identity) | M.HsuHS1ORF4820P | |
| 4830 | 465 aa hypothetical protein | |||
| 7670 | shikimate dehydrogenase (NADP(+)) | |||
| 7680 | M | M.Hsu4022ORF9470P (100% identity) | GTAC | M.HsuHS1ORF7680P |
| 7690 | R | Hsu4022ORF9470P (95% identity) | GTAC | HsuHS1ORF7680P |
| 7700 | 324 aa hypothetical protein | |||
| 9270 | phosphate acetyltransferase | |||
| 9280 | R | Hsu4022ORF4930P (100% identity) | HsuHS1ORF9300P | |
| 9290 | M | M2.Hsu4022ORF4930P (100% identity) | M2.HsuHS1ORF9300P | |
| 9300 | M | M1.Hsu4022ORF4930P (100% identity) | GCATC | M1.HsuHS1ORF9300P |
| 9320 | shikimate kinase | |||
| 9790 | 68 aa hypothetical protein | |||
| 9800 | S | S2.Hsu101cORF7550P (100% identity) | S2.HsuHS1ORF9820P | |
| 9810 | S | S.Hsu4022ORF4500P (51% identity) | S1.HsuHS1ORF9820P | |
| 9820 | RM | Hsu4022ORF4500P (100% identity) | HsuHS1ORF9820P | |
| 9830 | methyl-accepting chemotaxis sensory transducer | |||
| 9970 | polyisoprenoid-binding protein | |||
| 9980 | M | M.Hsu4022ORF4350P (50% identity) | M.HsuHS1ORF9980P | |
| 9990 | 166 aa hypothetical protein | |||
| 17000 | 55 aa hypothetical protein | |||
| 17010 | M | M.Hsu101cORF3700P (84% identity) | M.HsuHS1ORF17010P | |
| 17020 | 77 aa hypothetical protein | |||
| 17560 | 766 aa hypothetical protein | |||
| 17570 | M | M.Hsu101cORF10640P (54% identity) | M.HsuHS1ORF17570AP | |
| ??? | M | M.Hsu4022ORF16450P (15% identity) | M.HsuHS1ORF17570BP | |
| 17590 | 110 aa hypothetical protein | |||
| 17970 | 586 aa hypothetical protein | |||
| ??? | R | Hsu4022ORF16820P (68% identity) | GATC | HsuHS1ORF18000P |
| 18000 | M | M.Hsu4022ORF16820P (100% identity) | GATC | M.HsuHS1ORF18000P |
| 18010 | molybdenum cofactor guanylyltransferase | |||
| plasmid pHS_1 | ||||
| 18780 | 89 aa hypothetical protein | |||
| 18790 | M | M1.HsuHS1ORF19120P (93% identity) | M.HsuHS1ORF18790P | |
| 18800 | R | HsuHS1ORF19120P (48% identity) | HsuHS1ORF18790AP | |
| 18810 | R | HsuHS1ORF19120P (43% identity) | HsuHS1ORF18790BP | |
| 18820 | 344 aa hypothetical protein | |||
| 18810 | 241 aa hypothetical protein | |||
| 18820 | M | M2.Hsu0020ORF18230P (93% identity) | M.HsuHS1ORF18820P | |
| 18830 | 78 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1150 | HIT-like protein | |||
| 1160 | M | M.Hsu4022ORF1060P (99% identity) | M.HsuHS1ORF1160P | |
| 1170 | 69 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8580 | alginate lyase | |||
| 8590 | R | Hsu4022McrCP (100% identity) | HsuHS1McrCP | |
| 8600 | R | Hsu101cMcrBP (100% identity) | HsuHS1McrBP | |
| 8610 | 101 aa hypothetical protein | |||