Escherichia coli 3150 |
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Putative Escherichia coli 3150 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,100,777 bp | CP103657 |
| plasmid pMB5646_1: | 131,479 bp | CP103658 |
| plasmid pMB5646_2: | 109,579 bp | CP103659 |
| plasmid pMB5646_3: | 96,232 bp | CP103660 |
REBASE acronym: Eco3150
Org_num: 61520
All begin M5R25_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1325 | helix-turn-helix domain-containing protein | |||
| 1330 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | Eco3150ORF1355P |
| 1335 | histidinol-phosphatase | |||
| 1340 | DNA binding domain-containing protein | |||
| 1345 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Eco3150ORF1355P |
| 1350 | AAA family ATPase | |||
| 1355 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.Eco3150ORF1355P |
| 1360 | TniQ family protein | |||
| 10010 | IS3 family transposase | |||
| 10015 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.Eco3150ORF10015P |
| 10020 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco3150ORF10015P |
| 10025 | YecA family protein | |||
| 10030 | cold shock domain-containing protein | |||
| 10035 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | Eco3150ORF10015P |
| 10040 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1880 | cell division protein DamX | |||
| 1885 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco3150DamP |
| 1890 | ribulose-phosphate 3-epimerase | |||
| 2410 | DUF2556 family protein | |||
| 2415 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.Eco3150ORF2415P |
| 2420 | DNA-binding transcriptional regulator Fis | |||
| 9740 | phosphohydrolase | |||
| 9745 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.Eco3150DcmP |
| 9750 | V | V.Ecos142DcmP (100% identity) | V.Eco3150DcmP | |
| 9755 | drug/metabolite exporter YedA | |||
| 13490 | DUF3927 family protein | |||
| 13505 | M | M.SsoL4094ORF17545P (34% identity) | M.Eco3150ORF13505BP | |
| 13510 | IS3-like element IS150 family transposase | |||
| 13515 | M | M.SsoL4094ORF17545P (66% identity) | M.Eco3150ORF13505AP | |
| 13520 | TrmB family transcriptional regulator | |||
| 16000 | replication endonuclease | |||
| 16005 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco3150ORF16005P |
| 16010 | TraR/DksA family transcriptional regulator | |||
| 18995 | phage lysis protein EssD | |||
| 19000 | M | M.Ecos142ORF20090P (100% identity) | M.Eco3150ORF19000P | |
| 19005 | 67 aa hypothetical protein | |||
| 19035 | LexA family transcriptional regulator | |||
| 19040 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco3150ORF19040P |
| 19045 | PerC family transcriptional regulator | |||
| 21005 | HNH endonuclease | |||
| 21010 | R | SflN116ORF19475P (100% identity) | Eco3150ORF21010P | |
| 21015 | 100 aa hypothetical protein | |||
| 22545 | LexA family transcriptional regulator | |||
| 22550 | M | M.SdyFF10ORF21495P (100% identity) | GATC | M.Eco3150ORF22550P |
| 22555 | PerC family transcriptional regulator | |||
| plasmid pMB5646_1 | ||||
| 25310 | 73 aa hypothetical protein | |||
| 25315 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco3150ORF25315P |
| 25320 | 103 aa hypothetical protein | |||
| plasmid pMB5646_3 | ||||
| 26240 | recombination-associated protein RdgC | |||
| 26245 | M | M.EcoM1586ORF25860P (99% identity) | M.Eco3150ORF26245P | |
| 26250 | 86 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21015 | 100 aa hypothetical protein | |||
| 21020 | R | SflN116ORF19490P (76% identity) | Eco3150ORF21020P | |
| 21025 | IS1-like element IS1F family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pMB5646_2 | ||||
| 25985 | 76 aa hypothetical protein | |||
| 25990 | M | M.Sso524ORF460P (100% identity) | GATC | M.Eco3150ORF25990P |
| 25995 | 269 aa hypothetical protein | |||