Escherichia coli 3985 |
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Putative Escherichia coli 3985 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
Complete sequence: 4,840,778 bp
GenBank #: CP103623
REBASE acronym: Eco3985
Org_num: 61522
All begin M5T36_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1685 | cell division protein DamX | |||
| 1690 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco3985DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2240 | DUF2556 family protein | |||
| 2245 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco3985ORF2245P |
| 2250 | DNA-binding transcriptional regulator Fis | |||
| 5640 | PerC family transcriptional regulator | |||
| 5645 | M | M.EcoMB165ORF5930P (100% identity) | GATC | M.Eco3985ORF5645P |
| 5650 | LexA family transcriptional regulator | |||
| 5680 | 67 aa hypothetical protein | |||
| 5685 | M | M.Sso63633ORF22290P (100% identity) | M.Eco3985ORF5685P | |
| 5690 | phage lysis protein EssD | |||
| 9150 | phosphohydrolase | |||
| 9155 | M | M.EcoLR641DcmP (100% identity) | CCWGG | M.Eco3985DcmP |
| 9160 | V | V.Ecos195DcmP (100% identity) | V.Eco3985DcmP | |
| 9165 | drug/metabolite exporter YedA | |||
| 19575 | HNH endonuclease | |||
| 19580 | R | EcosC41ORF5230P (100% identity) | Eco3985ORF19580P | |
| 19585 | AAA family ATPase | |||
| 19900 | osmoprotectant transport activator ProQ | |||
| 19905 | M | M.SflFF24DndBP (100% identity) | M.Eco3985DndBP | |
| 19910 | DNA phosphorothioation system sulfurtransferase | |||
| 19905 | DNA sulfur modification protein DndB | |||
| 19910 | M | M.SflFF24DndCP (100% identity) | M.Eco3985DndCP | |
| 19915 | DNA sulfur modification protein DndD | |||
| 19910 | DNA phosphorothioation system sulfurtransferase | |||
| 19915 | M | M.Econumer3DndDP (100% identity) | M.Eco3985DndDP | |
| 19920 | DNA sulfur modification protein DndE | |||
| 19915 | DNA sulfur modification protein DndD | |||
| 19920 | M | M.SflFF24DndEP (100% identity) | M.Eco3985DndEP | |
| 19925 | DGQHR domain-containing protein | |||
| 19935 | accessory gene regulator B family protein | |||
| 19940 | R | EcosEC5DptHP (99% identity) | Eco3985DptHP | |
| 19945 | DNA phosphorothioation-dependent restriction | |||
| 19940 | DNA phosphorothioation-dependent restriction | |||
| 19945 | R | SflFF24DptGP (100% identity) | Eco3985DptGP | |
| 19950 | DNA phosphorothioation-dependent restriction | |||
| 19945 | DNA phosphorothioation-dependent restriction | |||
| 19950 | R | SflFF24DptFP (100% identity) | Eco3985DptFP | |
| 19955 | integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 19580 | HNH endonuclease | |||
| 19585 | R | SflN101McrBP (100% identity) | Eco3985McrBP | |
| 19590 | R | Ecows53McrCP (100% identity) | Eco3985McrCP | |
| 19595 | 128 aa hypothetical protein | |||