Escherichia coli NW114 |
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Putative Escherichia coli NW114 RM systems
Ref: Zhang,C. and Xu,T. unpublished
REBASE ref # 35192
| Sequence length: | GenBank #: | |
| Chromosome: | 4,955,094 bp | CP079840 |
| plasmid unnamed1: | 156,487 bp | CP079841 |
| plasmid unnamed2: | 67,286 bp | CP079842 |
REBASE acronym: EcoNW114
Org_num: 61555
All begin KW498_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5520 | integrase core domain-containing protein | |||
| 5525 | M | M.Kpn89II (100% identity) | GGANNNNNCTC | M.EcoNW114ORF5525P |
| 5530 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.EcoNW114ORF5525P |
| 5535 | R | Eco11131IP (100% identity) | GGANNNNNCTC | EcoNW114ORF5525P |
| 5540 | IS1 family transposase | |||
| 12025 | site-specific integrase | |||
| ??? | R | Eco0573ORF12810P (97% identity) | TCAGNNNNNNTGC | EcoNW114ORF12045P |
| 12035 | YecA family protein | |||
| 12040 | S | S.SenSMo01ORF8345P (100% identity) | TCAGNNNNNNTGC | S.EcoNW114ORF12045P |
| 12045 | M | M.SenSMo01ORF8345P (100% identity) | TCAGNNNNNNTGC | M.EcoNW114ORF12045P |
| 12050 | IS1 family transposase | |||
| 13940 | IS1 family transposase | |||
| ??? | S | S1.EhoEhh22ORF20275P (24% identity) | S2.EcoNW114ORF14015P | |
| 13945 | IS5-like element ISKpn26 family transposase | |||
| 13950 | replication initiation protein | |||
| 13955 | 234 aa hypothetical protein | |||
| 13960 | ETC complex I subunit | |||
| 13965 | DNA-binding protein | |||
| 13970 | 114 aa hypothetical protein | |||
| 13975 | IS66 family insertion sequence hypothetical | |||
| 13980 | IS66 family insertion sequence element accessory | |||
| 13985 | IS66 family transposase | |||
| 13990 | cell filamentation protein Fic | |||
| 13995 | 56 aa hypothetical protein | |||
| 14000 | R | Sen25333ORF16070P (100% identity) | EcoNW114ORF14015P | |
| 14005 | DUF91 domain-containing protein | |||
| 14010 | S | S.Sen25333ORF16070P (100% identity) | S1.EcoNW114ORF14015P | |
| 14015 | M | M.Eco0573ORF10565P (100% identity) | M.EcoNW114ORF14015P | |
| 14020 | 490 aa hypothetical protein | |||
| 20610 | DUF4268 domain-containing protein | |||
| 20615 | R | Eco2EC1ORF19035P (100% identity) | EcoNW114ORF20615P | |
| ??? | S | S2.Eco8119ORF12525P (22% identity) | S.EcoNW114ORF20615P | |
| 20630 | HNH endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1890 | cell division protein DamX | |||
| 1895 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoNW114DamP |
| 1900 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.EcoW102ORF2375P (100% identity) | ATGCAT | M.EcoNW114ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 3510 | AAA family ATPase | |||
| 3515 | M | M.Eco16443ORF3250P (100% identity) | M.EcoNW114ORF3515P | |
| 3520 | R | Eco0573ORF3460P (100% identity) | EcoNW114ORF3515P | |
| 3525 | YhaC family protein | |||
| 9340 | phosphohydrolase | |||
| 9345 | M | M.Eco16443DcmP (100% identity) | CCWGG | M.EcoNW114DcmP |
| 9350 | V | V.SflSTLE1DcmP (100% identity) | V.EcoNW114DcmP | |
| 9355 | drug/metabolite exporter YedA | |||
| 20625 | IS1 family transposase | |||
| 20630 | R | Eco16443ORF20985P (100% identity) | GAAC | EcoNW114ORF20630P |
| 20635 | integrase arm-type DNA-binding domain-containing | |||
| 21435 | BREX system P-loop protein BrxC | |||
| 21440 | RM | EcoS1ORF18750P (100% identity) | EcoNW114ORF21440P | |
| 21445 | BREX-1 system phosphatase PglZ type A | |||
| 22050 | LexA family transcriptional regulator | |||
| 22055 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoNW114ORF22055P |
| 22060 | PerC family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 25050 | 82 aa hypothetical protein | |||
| 25055 | M | M.Kqu645ORF56420P (100% identity) | M.EcoNW114ORF25055P | |
| 25060 | SOS response-associated peptidase family | |||
| plasmid unnamed2 | ||||
| 25245 | 66 aa hypothetical protein | |||
| 25250 | M | M.KpnP72ORF28970P (100% identity) | M.EcoNW114ORF25250P | |
| 25255 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23990 | 529 aa hypothetical protein | |||
| ??? | M | M.CfrC03ORF23955P (98% identity) | M.EcoNW114ORF24000P | |
| ??? | R | EcosAW17ORF23610P (69% identity) | EcoNW114ORF24000AP | |
| 24015 | IS1 family transposase | |||
| 24020 | R | EcosAW17ORF23610P (25% identity) | EcoNW114ORF24000BP | |
| 24025 | IS3 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23000 | 59 aa hypothetical protein | |||
| 23005 | M | M.Csp696ORF24530P (100% identity) | M.EcoNW114ORF23005P | |
| 23010 | 70 aa hypothetical protein | |||