Citrobacter youngae CF10 |
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Putative Citrobacter youngae CF10 RM systems
Ref: Huang,J. unpublished
REBASE ref # 24830
| Sequence length: | GenBank #: | |
| Chromosome: | 5,010,143 bp | CP102500 |
| plasmid pCF10-C: | 80,740 bp | CP102503 |
| plasmid pCF10-NDM: | 138,196 bp | CP102502 |
| plasmid pCF10-tmexCD1: | 212,154 bp | CP102501 |
REBASE acronym: CyoCF10
Org_num: 61088
All begin NUG39_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3395 | 615 aa hypothetical protein | |||
| 3400 | R | CfrM92ORF3620P (99% identity) | CyoCF10ORF3410P | |
| 3405 | S | S.CfrM92ORF3620P (99% identity) | S1.CyoCF10ORF3410P | |
| 3410 | M | M.CfrM92ORF3620P (100% identity) | M.CyoCF10ORF3410P | |
| 3415 | S | S2.Cfr2385ORF18115P (100% identity) | S2.CyoCF10ORF3410P | |
| 3420 | GTPase family protein | |||
| 6265 | restriction system-associated AAA family ATPase | |||
| ??? | S | S.KpnYI2ORF1234P (44% identity) | S2.CyoCF10ORF6285P | |
| 6280 | S | S.KpnYI2ORF1234P (29% identity) | S1.CyoCF10ORF6285P | |
| 6285 | M | M.KpnYI2ORF1234P (90% identity) | M.CyoCF10ORF6285P | |
| 6290 | integrase | |||
| 7785 | PD-(D/E)XK nuclease family protein | |||
| 7790 | R | EcoW12E19ORF23680P (99% identity) | CyoCF10ORF7795P | |
| 7795 | M | M.EcoW12E19ORF23680P (100% identity) | M.CyoCF10ORF7795P | |
| 7800 | S | S.Cfr181ORF24140P (100% identity) | S.CyoCF10ORF7795P | |
| 7805 | nuclease | |||
| 9775 | 388 aa hypothetical protein | |||
| 9780 | M | M.Csp0887ORF10835P (100% identity) | M.CyoCF10ORF9780P | |
| 9785 | S | S.Csp0887ORF10835P (100% identity) | S.CyoCF10ORF9780P | |
| 9790 | YecA family protein | |||
| 9795 | R | Cbr1b1ORF16305P (99% identity) | CyoCF10ORF9780P | |
| 9800 | M48 family metallopeptidase | |||
| 20825 | restriction endonuclease | |||
| 20830 | M | M.CpoSb2ORF12055P (99% identity) | M.CyoCF10ORF20830P | |
| 20835 | S | S.Sen10527ORF19005P (62% identity) | S.CyoCF10ORF20830P | |
| 20840 | R | Csp156IP (98% identity) | CyoCF10ORF20830P | |
| 20845 | endoribonuclease SymE | |||
| plasmid pCF10-C | ||||
| 26005 | VOC family protein | |||
| 26010 | M | M.KpnKP120ORF22425P (100% identity) | M.CyoCF10ORF26010P | |
| 26015 | S | S.SenLG26II (18% identity) | S1.CyoCF10ORF26010P | |
| 26020 | 328 aa hypothetical protein | |||
| 26025 | ATP-dependent helicase | |||
| 26030 | 84 aa hypothetical protein | |||
| 26035 | type I restriction-modification system subunit M | |||
| 26040 | S | S.Kmi495ORF36630P (66% identity) | S2.CyoCF10ORF26010P | |
| 26045 | R | Kmi495ORF36630P (100% identity) | CyoCF10ORF26010P | |
| 26050 | ISL3-like element ISKpn25 family transposase | |||
| plasmid pCF10-tmexCD1 | ||||
| 24845 | ISL3-like element ISSm4 family transposase | |||
| 24850 | R | Ecl93bORF4657P (100% identity) | CyoCF10ORF24865P | |
| 24855 | S | S.Ecl93bORF4657P (100% identity) | S2.CyoCF10ORF24865P | |
| 24860 | S | S1.AalK520ORF23360P (100% identity) | S1.CyoCF10ORF24865P | |
| 24865 | M | M.SmaY426ORF10P (100% identity) | M.CyoCF10ORF24865P | |
| 24870 | class 1 integron integrase IntI1 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1810 | cell division protein DamX | |||
| 1815 | M | M.Cyo1DamP (100% identity) | GATC | M.CyoCF10DamP |
| 1820 | ribulose-phosphate 3-epimerase | |||
| 2300 | DUF2556 family protein | |||
| 2305 | M | M.Cyo1ORFJP (95% identity) | ATGCAT | M.CyoCF10ORF2305P |
| 2310 | DNA-binding transcriptional regulator Fis | |||
| 6350 | 340 aa hypothetical protein | |||
| 6355 | M | M.Eco9067ORF1943P (97% identity) | M1.CyoCF10ORF6355P | |
| 6360 | M | M1.Cfr435ORFFP (97% identity) | M2.CyoCF10ORF6355P | |
| 6365 | RusA family crossover junction | |||
| 9475 | phosphohydrolase | |||
| 9480 | M | M.Cyo13709ORF1821P (97% identity) | CCWGG | M.CyoCF10ORF9480P |
| 9485 | V | V.Cyo1ORFGP (100% identity) | CCWGG | V.CyoCF10ORF9480P |
| 9490 | drug/metabolite exporter YedA | |||
| 14425 | RusA family crossover junction | |||
| 14430 | M | M.CfrCF51ORF6250P (84% identity) | M.CyoCF10ORF14430P | |
| 14435 | Ref family protein | |||
| 14810 | DUF4917 family protein | |||
| 14815 | M | M.Cfr691ORFBP (98% identity) | M.CyoCF10ORF14815P | |
| 14820 | 849 aa hypothetical protein | |||
| plasmid pCF10-NDM | ||||
| 25805 | 73 aa hypothetical protein | |||
| 25810 | M | M.SmaQC11ORF52800P (100% identity) | M.CyoCF10ORF25810P | |
| 25815 | 56 aa hypothetical protein | |||
| plasmid pCF10-tmexCD1 | ||||
| 25060 | DNA-binding protein | |||
| 25065 | M | M1.SenF8025ORFBP (100% identity) | M.CyoCF10ORF25065P | |
| 25070 | 273 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3245 | inovirus Gp2 family protein | |||
| 3250 | R | Kqu2018ORF4320P (100% identity) | CyoCF10ORF3250P | |
| 3255 | 180 aa hypothetical protein | |||
| plasmid pCF10-NDM | ||||
| 25670 | 132 aa hypothetical protein | |||
| 25675 | R | RorVR1ORF60280P (100% identity) | CyoCF10ORF25680P | |
| 25680 | M | M.RorVR1ORF60280P (100% identity) | M.CyoCF10ORF25680P | |
| 25685 | DEAD/DEAH box helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20815 | 130 aa hypothetical protein | |||
| 20820 | R | CfrR17McrBP (100% identity) | CyoCF10McrBP | |
| 20825 | R | Csp156McrCP (100% identity) | CyoCF10McrCP | |
| 20830 | type I restriction-modification system subunit | |||