Escherichia coli PD4 |
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Putative Escherichia coli PD4 RM systems
Ref: Lopez-Dorta,Y. et al. unpublished
REBASE ref # 35036
| Sequence length: | GenBank #: | |
| Chromosome: | 4,834,399 bp | CP074007 |
| plasmid pYLPD4a: | 112,267 bp | CP074008 |
REBASE acronym: EcoPD4
Org_num: 60940
All begin KFU74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7030 | GTPase family protein | |||
| 7035 | M | M.EcoPI24ORF3560P (100% identity) | M.EcoPD4ORF7035P | |
| 7040 | S | S.EcoPI24ORF3560P (100% identity) | S.EcoPD4ORF7035P | |
| 7045 | R | EcoPI24ORF3560P (100% identity) | EcoPD4ORF7035P | |
| 7050 | transposase domain-containing protein | |||
| 10810 | IS1 family transposase | |||
| 10815 | M | M.EcoMB64ORF9265P (100% identity) | M.EcoPD4ORF10815P | |
| 10820 | S | S.EcoMB64ORF9265P (100% identity) | S.EcoPD4ORF10815P | |
| 10825 | YecA family protein | |||
| 10830 | R | EcoP44ORFDP (99% identity) | EcoPD4ORF10815P | |
| 10835 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3085 | cell division protein DamX | |||
| 3090 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPD4DamP |
| 3095 | ribulose-phosphate 3-epimerase | |||
| 3710 | DUF2556 family protein | |||
| 3715 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoPD4ORF3715P |
| 3720 | DNA-binding transcriptional regulator Fis | |||
| 10525 | phosphohydrolase | |||
| 10530 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoPD4DcmP |
| 10535 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoPD4DcmP |
| 10540 | drug/metabolite exporter YedA | |||
| plasmid pYLPD4a | ||||
| 23450 | 76 aa hypothetical protein | |||
| 23455 | M | M.SphSSU5ORF88P (93% identity) | M.EcoPD4ORF23455P | |
| 23460 | 290 aa hypothetical protein | |||