Escherichia coli PI12 |
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Putative Escherichia coli PI12 RM systems
Ref: Lopez-Dorta,Y. et al. unpublished
REBASE ref # 35036
Complete sequence: 4,689,191 bp
GenBank #: CP074005
REBASE acronym: EcoPI12
Org_num: 60942
All begin KFU69_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5620 | IS1 family transposase | |||
| 5625 | R | Ecos41ORF13465P (100% identity) | EcoPI12ORF5640P | |
| 5630 | S | S.KpnS1313ORF16435P (52% identity) | S2.EcoPI12ORF5640P | |
| 5635 | S | S.KpnS1313ORF16435P (45% identity) | S1.EcoPI12ORF5640P | |
| 5640 | M | M.Ror24150ORF17255P (100% identity) | M.EcoPI12ORF5640P | |
| 5645 | ParB N-terminal domain-containing protein | |||
| 19130 | restriction endonuclease | |||
| 19135 | M | M.Eco10008ORF17340P (100% identity) | M.EcoPI12ORF19135P | |
| 19140 | S | S.EcoB8S18ORF8160P (40% identity) | S.EcoPI12ORF19135P | |
| 19145 | IS1-like element IS1A family transposase | |||
| 19150 | type I restriction endonuclease subunit S | |||
| 19155 | R | Eco10008ORF17340P (26% identity) | EcoPI12ORF19135AP | |
| 19160 | IS3 family transposase | |||
| 19165 | R | SdySWHE2ORF4295P (73% identity) | EcoPI12ORF19135BP | |
| 19170 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1620 | cell division protein DamX | |||
| 1625 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPI12DamP |
| 1630 | ribulose-phosphate 3-epimerase | |||
| 2245 | DUF2556 family protein | |||
| 2250 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoPI12ORF2250P |
| 2255 | DNA-binding transcriptional regulator Fis | |||
| 3810 | DEAD/DEAH box helicase | |||
| 3815 | RM | Eco2919ORF22435P (96% identity) | EcoPI12ORF3815P | |
| 9045 | phosphohydrolase | |||
| 9050 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoPI12DcmP |
| 9055 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoPI12DcmP |
| 9060 | drug/metabolite exporter YedA | |||
| 19485 | IS1 family transposase | |||
| 19490 | M | M2.EcosEC4ORF20110P (42% identity) | M.EcoPI12ORF19490P | |
| 19495 | IS21-like element ISEc12 family helper ATPase | |||
| 20320 | IS1 family transposase | |||
| 20325 | RM | EcoPEC0003ORF9200P (74% identity) | EcoPI12ORF20325P | |
| 20330 | BREX-1 system phosphatase PglZ type A | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8310 | 86 aa hypothetical protein | |||
| 8315 | R | EcoL621ORF8205P (100% identity) | EcoPI12ORF8315P | |
| 8320 | 108 aa hypothetical protein | |||
| 19125 | BrnT family toxin | |||
| 19130 | R | Eco10008MrrP (100% identity) | EcoPI12MrrP | |
| 19135 | type I restriction-modification system subunit | |||
| 19465 | glycosyltransferase family 2 protein | |||
| 19470 | R | EcosS3McrBP (100% identity) | EcoPI12McrBP | |
| 19475 | R | EcosS9McrCP (100% identity) | EcoPI12McrCP | |
| 19480 | IS1 family transposase | |||