Mycoplasma species 1578d |
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Putative Mycoplasma species 1578d RM systems
Ref: Spergser,J. unpublished
REBASE ref # 27781
Complete sequence: 893,515 bp
GenBank #: CP102081
REBASE acronym: Msp1578d
Org_num: 60976
All begin NPA11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2585 | class I SAM-dependent methyltransferase | |||
| 2590 | S | S.Msp3686dORF2815P (98% identity) | S.Msp1578dORF2590P | |
| 2595 | M42 family metallopeptidase | |||
| 3430 | helix-turn-helix transcriptional regulator | |||
| 3435 | S | S.Msp3686dORF3730P (28% identity) | S2.Msp1578dORF3445P | |
| 3440 | S | S.Msp3686dORF3730P (65% identity) | S1.Msp1578dORF3445P | |
| 3445 | M | M.Msp3686dORF3730P (100% identity) | M.Msp1578dORF3445P | |
| 3450 | 289 aa hypothetical protein | |||
| 3455 | R | Msp3686dORF3730P (65% identity) | Msp1578dORF3445P | |
| 3460 | 66 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1520 | 30S ribosome-binding factor RbfA | |||
| ??? | R | Msp3686dORF1505P (100% identity) | Msp1578dORF1530P | |
| 1530 | M | M.Msp3686dORF1505P (100% identity) | M.Msp1578dORF1530P | |
| 1535 | DUF6088 family protein | |||
| 1770 | DUF31 family protein | |||
| 1775 | M | M.Msp3686dORF1750P (100% identity) | M.Msp1578dORF1775P | |
| 1780 | RM | Msp3686dORF1750P (100% identity) | Msp1578dORF1775P | |
| 1785 | 217 aa hypothetical protein | |||
| 2840 | 141 aa hypothetical protein | |||
| 2845 | R | Msp3686dORF3145P (100% identity) | Msp1578dORF2850P | |
| 2850 | M | M.Msp3686dORF3145P (100% identity) | M.Msp1578dORF2850P | |
| 2865 | 194 aa hypothetical protein | |||
| 2870 | M | M.Msp3686dORF3165P (100% identity) | M.Msp1578dORF2870P | |
| 2875 | R | Msp3686dORF3165P (100% identity) | Msp1578dORF2870P | |
| 2880 | 122 aa hypothetical protein | |||
| 3295 | 686 aa hypothetical protein | |||
| 3300 | R | Msp3686dORF3595P (100% identity) | Msp1578dORF3305P | |
| 3305 | M | M.Msp3686dORF3595P (100% identity) | M.Msp1578dORF3305P | |
| 3310 | 23S rRNA (uracil(1939)-C(5))-methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1205 | DNA gyrase subunit A | |||
| 1210 | R | Msp3686dORF1200P (100% identity) | Msp1578dORF1215P | |
| ??? | M | M.Msp3686dORF1200P (93% identity) | M1.Msp1578dORF1215P | |
| ??? | M | M.Msp3686dORF1200P (51% identity) | M2.Msp1578dORF1215P | |
| 1235 | DEAD/DEAH box helicase family protein | |||
| 1230 | type III restriction endonuclease subunit M | |||
| 1235 | R | Msp3686dORF1215P (99% identity) | Msp1578dORF1240P | |
| 1240 | M | M.Msp3686dORF1215P (73% identity) | M.Msp1578dORF1240BP | |
| 1245 | M | M.Msp3686dORF1215P (21% identity) | M.Msp1578dORF1240AP | |
| 1250 | 16S rRNA pseudouridine(516) synthase | |||
| 2050 | 841 aa hypothetical protein | |||
| 2055 | M | M.Msp3686dORF2035P (78% identity) | M.Msp1578dORF2055AP | |
| 2060 | M | M.McaST6ORF1990P (18% identity) | M.Msp1578dORF2055BP | |
| 2065 | R | Msp3686dORF2035P (99% identity) | Msp1578dORF2055P | |
| 2070 | 425 aa hypothetical protein | |||