Escherichia coli C31 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli C31 RM systems
Ref: Chen,Y. et al. unpublished
REBASE ref # 35015
Complete sequence: 5,138,173 bp
GenBank #: CP102061
REBASE acronym: EcoC31
Org_num: 60835
All begin NP943_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12290 | TniQ family protein | |||
| 12295 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.EcoC31ORF12295P |
| 12300 | AAA family ATPase | |||
| 12305 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.EcoC31ORF12295P |
| 12310 | DNA binding domain-containing protein | |||
| 12315 | histidinol-phosphatase | |||
| 12320 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | EcoC31ORF12295P |
| 12325 | helix-turn-helix domain-containing protein | |||
| 12670 | helix-turn-helix domain-containing protein | |||
| 12675 | R | Sma1978ORFBP (95% identity) | ACGNNNNNGTTG | EcoC31ORF12705P |
| 12685 | 567 aa hypothetical protein | |||
| 12690 | DNA binding domain-containing protein | |||
| 12695 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.EcoC31ORF12705P |
| 12700 | AAA family ATPase | |||
| 12705 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.EcoC31ORF12705P |
| 12710 | TniQ family protein | |||
| 17620 | endoribonuclease SymE | |||
| 17625 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | EcoC31ORF17635P |
| 17630 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.EcoC31ORF17635P |
| 17635 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.EcoC31ORF17635P |
| 17640 | restriction endonuclease | |||
| 19445 | ash family protein | |||
| 19450 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC31ORF19455P |
| 19455 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC31ORF19455P |
| 19460 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC31ORF19455P |
| 19465 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3460 | drug/metabolite exporter YedA | |||
| 3465 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC31DcmP |
| 3470 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC31DcmP |
| 3475 | phosphohydrolase | |||
| 7140 | 121 aa hypothetical protein | |||
| 7145 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoC31ORF7150P |
| 7150 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoC31ORF7150P |
| 7155 | 257 aa hypothetical protein | |||
| 7280 | phage lysis protein EssD | |||
| 7285 | M | M.EcoWATORF2902P (100% identity) | M.EcoC31ORF7285P | |
| 7290 | 67 aa hypothetical protein | |||
| 7320 | LexA family transcriptional regulator | |||
| 7325 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoC31ORF7325P |
| 7330 | PerC family transcriptional regulator | |||
| 11140 | DNA-binding transcriptional regulator Fis | |||
| 11145 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC31ORF11145P |
| 11150 | DUF2556 family protein | |||
| 11740 | ribulose-phosphate 3-epimerase | |||
| 11745 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC31DamP |
| 11750 | cell division protein DamX | |||
| 15020 | 175 aa hypothetical protein | |||
| 15025 | M | M.Kpn569ORF24840P (100% identity) | M.EcoC31ORF15025P | |
| 15030 | DUF2441 domain-containing protein | |||
| 17275 | helix-turn-helix domain-containing protein | |||
| 17280 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC31ORF17280P |
| 17285 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC31ORF17280P |
| 17290 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC31ORF17280P |
| 17295 | McrC family protein | |||
| 22940 | 71 aa hypothetical protein | |||
| 22945 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC31ORF22945P | |
| 22950 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17290 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 17295 | R | EcosS9McrCP (100% identity) | EcoC31McrCP | |
| 17300 | R | EcosS3McrBP (100% identity) | EcoC31McrBP | |
| 17305 | glycosyltransferase | |||
| 17635 | type I restriction-modification system subunit | |||
| 17640 | R | EcosS9MrrP (100% identity) | EcoC31MrrP | |
| 17645 | BrnT family toxin | |||