Escherichia coli CPF6 |
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Putative Escherichia coli CPF6 RM systems
Ref: Khine,N.O. unpublished
REBASE ref # 34983
| Sequence length: | GenBank #: | |
| Chromosome: | 4,714,179 bp | CP075737 |
| plasmid pCPF6-IncFIB: | 116,264 bp | CP075739 |
| plasmid pCPF6-IncFII: | 77,891 bp | CP075741 |
| plasmid pCPF6-IncI1: | 95,375 bp | CP075740 |
| plasmid unnamed1: | 222,848 bp | CP075738 |
REBASE acronym: EcoCPF6
Org_num: 60716
All begin KKZ13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCPF6-IncFII | ||||
| 25185 | ANR family transcriptional regulator | |||
| 25190 | R | SenS1545ORF24780P (100% identity) | EcoCPF6ORF25195P | |
| 25195 | M | M.SenS1545ORF24780P (100% identity) | M.EcoCPF6ORF25195P | |
| 25200 | chromosome segregation protein SMC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5360 | drug/metabolite exporter YedA | |||
| 5365 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoCPF6DcmP |
| 5370 | M | M.EcoY18JDcmP (99% identity) | CCWGG | M.EcoCPF6DcmP |
| 5375 | HD domain-containing protein | |||
| 12045 | DNA-binding transcriptional regulator Fis | |||
| 12050 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoCPF6ORF12050P |
| 12055 | DUF2556 family protein | |||
| 12660 | ribulose-phosphate 3-epimerase | |||
| 12665 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCPF6DamP |
| 12670 | cell division protein DamX | |||
| 21965 | TraR/DksA family transcriptional regulator | |||
| 21970 | M | M.Eco51841ORF8535P (100% identity) | GATC | M.EcoCPF6ORF21970P |
| 21975 | replication endonuclease | |||
| plasmid pCPF6-IncFII | ||||
| 24915 | 103 aa hypothetical protein | |||
| 24920 | M | M.Sso11ORF329P (100% identity) | M.EcoCPF6ORF24920P | |
| 24925 | 73 aa hypothetical protein | |||
| plasmid pCPF6-IncI1 | ||||
| 24420 | 102 aa hypothetical protein | |||
| 24425 | M | M.SflFF3ORF25360P (100% identity) | SAY | M.EcoCPF6ORF24425P |
| 24430 | 73 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23150 | thermonuclease family protein | |||
| 23155 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoCPF6ORF23155P |
| 23160 | 55 aa hypothetical protein | |||
| 23630 | DNA-binding protein | |||
| 23635 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoCPF6ORF23635P |
| 23640 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 835 | zinc-ribbon domain-containing protein | |||
| 840 | R | SflN97McrBP (100% identity) | EcoCPF6McrBP | |
| 845 | R | SflN97McrCP (100% identity) | EcoCPF6McrCP | |
| 850 | IS5 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCPF6-IncFIB | ||||
| 24180 | 76 aa hypothetical protein | |||
| 24185 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoCPF6ORF24185P |
| 24190 | 269 aa hypothetical protein | |||