Escherichia coli BY9F33 |
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Putative Escherichia coli BY9F33 RM systems
Ref: Gao,X. et al. unpublished
REBASE ref # 34692
| Sequence length: | GenBank #: | |
| Chromosome: | 5,083,870 bp | CP101732 |
| plasmid pHNBYF33-1: | 238,926 bp | CP101733 |
| plasmid pHNBYF33-2: | 127,224 bp | CP101734 |
| plasmid pHNBYF33-3: | 111,215 bp | CP101735 |
REBASE acronym: EcoF33
Org_num: 60713
All begin K3490_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3575 | IS3 family transposase | |||
| ??? | M | M.EcoS1720ORFBP (100% identity) | M.EcoF33ORF3585P | |
| 3590 | IS21-like element IS100 family transposase | |||
| 3645 | IS5 family transposase | |||
| 3650 | R | EcosEC71ORF17675P (100% identity) | EcoF33ORF3660P | |
| 3655 | S | S.EcoFLI21ORF16100P (100% identity) | S.EcoF33ORF3660P | |
| 3660 | M | M.EcosEC71ORF17675P (100% identity) | M.EcoF33ORF3660P | |
| 3665 | GTPase family protein | |||
| 20840 | restriction endonuclease | |||
| 20845 | M | M.EcoSCU316ORF2545P (99% identity) | M.EcoF33ORF20845P | |
| 20850 | S | S.EcoSCU316ORF2545P (100% identity) | S.EcoF33ORF20845P | |
| 20855 | R | EcoSCU316ORF2545P (100% identity) | EcoF33ORF20845P | |
| 20860 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2010 | cell division protein DamX | |||
| 2015 | M | M.EcoSCU316DamP (100% identity) | GATC | M.EcoF33DamP |
| 2020 | ribulose-phosphate 3-epimerase | |||
| 2525 | DUF2556 family protein | |||
| 2530 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.EcoF33ORF2530P |
| 2535 | DNA-binding transcriptional regulator Fis | |||
| 7475 | recombination protein NinB | |||
| 7480 | M | M.EcoTrh52ORF21975P (100% identity) | GATC | M.EcoF33ORF7480P |
| 7485 | NinE family protein | |||
| 7485 | NinE family protein | |||
| 7490 | M | M.EcoAPEO2ORF14365P (100% identity) | GATC | M.EcoF33ORF7490P |
| 7495 | protein ninF | |||
| 9885 | HD domain-containing protein | |||
| 9890 | M | M.SflSTLE3DcmP (99% identity) | CCWGG | M.EcoF33DcmP |
| 9895 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoF33DcmP |
| 9900 | drug/metabolite exporter YedA | |||
| 13125 | ATP-binding protein | |||
| 13130 | M | M.Sen58011ORF9805P (100% identity) | M.EcoF33ORF13130P | |
| 13135 | DUF977 family protein | |||
| 17550 | LexA family transcriptional regulator | |||
| 17555 | M | M.EcoM718ORFFP (100% identity) | GATC | M.EcoF33ORF17555P |
| 17560 | PerC family transcriptional regulator | |||
| 21805 | integrase | |||
| 21810 | R | SenLY67DptFP (100% identity) | EcoF33DptFP | |
| 21815 | DNA phosphorothioation-dependent restriction | |||
| 21810 | DNA phosphorothioation-dependent restriction | |||
| 21815 | R | SenLY67DptGP (100% identity) | EcoF33DptGP | |
| 21820 | DNA phosphorothioation-dependent restriction | |||
| 21815 | DNA phosphorothioation-dependent restriction | |||
| 21820 | R | Eco1808DptHP (99% identity) | EcoF33DptHP | |
| 21825 | 172 aa hypothetical protein | |||
| 21830 | DNA phosphorothioation-associated DGQHR protein | |||
| 21835 | M | M.SflFF24DndEP (100% identity) | M.EcoF33DndEP | |
| 21840 | DNA sulfur modification protein DndD | |||
| 21835 | DNA sulfur modification protein DndE | |||
| 21840 | M | M.SflFF24DndDP (100% identity) | M.EcoF33DndDP | |
| 21845 | DNA phosphorothioation system sulfurtransferase | |||
| 21840 | DNA sulfur modification protein DndD | |||
| 21845 | M | M.SflFF24DndCP (100% identity) | M.EcoF33DndCP | |
| 21850 | DNA sulfur modification protein DndB | |||
| 21845 | DNA phosphorothioation system sulfurtransferase | |||
| 21850 | M | M.SflFF24DndBP (100% identity) | M.EcoF33DndBP | |
| 21855 | osmoprotectant transport activator ProQ | |||
| plasmid pHNBYF33-1 | ||||
| 24290 | thermonuclease family protein | |||
| 24295 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoF33ORF24295P |
| 24300 | 55 aa hypothetical protein | |||
| 25020 | 284 aa hypothetical protein | |||
| 25025 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoF33ORF25025P |
| 25030 | DNA-binding protein | |||
| 25135 | 202 aa hypothetical protein | |||
| 25140 | M | M.YpsF1ORFBP (100% identity) | M.EcoF33ORF25140P | |
| 25145 | 48 aa hypothetical protein | |||
| plasmid pHNBYF33-2 | ||||
| 26200 | 70 aa hypothetical protein | |||
| ??? | M | M.EcoDEC10FORF6025P (63% identity) | M.EcoF33ORF26215P | |
| 26220 | DNA cytosine methyltransferase | |||
| 26215 | Dam family site-specific | |||
| 26220 | M | M.Eco503CCORF980P (31% identity) | M.EcoF33ORF26220P | |
| 26225 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 345 | zinc-ribbon domain-containing protein | |||
| 350 | R | Kpn0718McrBP (100% identity) | EcoF33McrBP | |
| 355 | R | SflN97McrCP (100% identity) | EcoF33McrCP | |
| 360 | IS3 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pHNBYF33-3 | ||||
| 26795 | 76 aa hypothetical protein | |||
| 26800 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoF33ORF26800P |
| 26805 | 269 aa hypothetical protein | |||