Escherichia coli TUM1887 |
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Putative Escherichia coli TUM1887 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,879,343 bp | AP026463 |
| plasmid pMTY1887_IncN: | 47,664 bp | AP026467 |
| plasmid pMTY1887_NA1: | 127,328 bp | AP026464 |
| plasmid pMTY1887_NA2: | 95,639 bp | AP026465 |
REBASE acronym: EcoM1887
Org_num: 60403
All begin TUM1887_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38670 | 118 aa hypothetical protein | |||
| 38680 | R | EcoXH993ORF23720P (100% identity) | CACNNNNNNNCTGG | EcoM1887ORF38690P |
| 38690 | M | M.SflTORF4636P (98% identity) | CACNNNNNNNCTGG | M.EcoM1887ORF38690P |
| 38700 | S | S.EcoUM1887ORF20145P (100% identity) | CACNNNNNNNCTGG | S.EcoM1887ORF38690P |
| 38710 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4410 | acrEF/envCD operon transcriptional regulator | |||
| 4420 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoM1887ORF4420P |
| 4430 | DNA-binding protein Fis | |||
| 11930 | 75 aa hypothetical protein | |||
| 11940 | M | M.EcoUM1887ORF6160P (100% identity) | GATC | M.EcoM1887ORF11940P |
| 11950 | replication endonuclease from | |||
| 18750 | 231 aa hypothetical protein | |||
| 18760 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoM1887DcmP |
| 18770 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoM1887DcmP |
| 18780 | multidrug transporter | |||
| plasmid pMTY1887_IncN | ||||
| 48480 | IS6 family transposase | |||
| 48490 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoM1887ORF48500P |
| 48500 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoM1887ORF48500P |
| 48510 | 88 aa hypothetical protein | |||
| plasmid pMTY1887_NA1 | ||||
| 46300 | 73 aa hypothetical protein | |||
| 46310 | M | M.SflN92ORF24820P (100% identity) | M.EcoM1887ORF46310P | |
| 46320 | 145 aa hypothetical protein | |||
| plasmid pMTY1887_NA2 | ||||
| 46780 | recombination-associated protein RdgC | |||
| 46790 | M | M.EcoUM1887ORF24485P (100% identity) | M.EcoM1887ORF46790P | |
| 46800 | 63 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38710 | endoribonuclease SymE | |||
| 38720 | R | Ecou015GmrSDP (99% identity) | EcoM1887GmrSDP | |
| 38730 | 49 aa hypothetical protein | |||