Escherichia coli TUM1886 |
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Putative Escherichia coli TUM1886 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,639,055 bp | AP026454 |
| plasmid pMTY1886_NA2: | 97,409 bp | AP026456 |
REBASE acronym: EcoM1886
Org_num: 60402
All begin TUM1886_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 33940 | 58 aa hypothetical protein | |||
| 33950 | M | M.EcoW14588ORF21505P (100% identity) | YTCANNNNNNGTNG | M.EcoM1886ORF33950P |
| 33960 | S | S1.EcoUM1886ORF17525P (100% identity) | YTCANNNNNNGTNG | S.EcoM1886ORF33950P |
| 33970 | 218 aa hypothetical protein | |||
| 33980 | 355 aa hypothetical protein | |||
| 33990 | R | EcoUM1886ORF17525P (100% identity) | YTCANNNNNNGTNG | EcoM1886ORF33950P |
| 34000 | metal-dependent hydrolase | |||
| 45310 | 550 aa hypothetical protein | |||
| 45320 | R | EcoUM1886ORF23420P (100% identity) | CCANNNNNNNNNTTGG | EcoM1886ORF45330P |
| 45330 | M | M.SflTORF4636P (98% identity) | CCANNNNNNNNNTTGG | M.EcoM1886ORF45330P |
| 45340 | S | S.EcoUM1886ORF23420P (100% identity) | CCANNNNNNNNNTTGG | S.EcoM1886ORF45330P |
| 45350 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4210 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoM1886DamP |
| 4230 | ribulose-phosphate 3-epimerase | |||
| 5190 | acrEF/envCD operon repressor | |||
| 5200 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoM1886ORF5200P |
| 5210 | DNA-binding protein Fis | |||
| 9000 | 50S ribosomal protein L31 type B | |||
| 9010 | R | EcoUM1886ORF4655P (100% identity) | GAATTC | EcoM1886ORF9020P |
| 9020 | M | M.SenH18ORF28321P (100% identity) | GAATTC | M.EcoM1886ORF9020P |
| 9030 | 107 aa hypothetical protein | |||
| 19450 | 65 aa hypothetical protein | |||
| 19460 | M | M.EcoUM1886ORF10080P (100% identity) | M.EcoM1886ORF19460P | |
| 19470 | holin | |||
| 19850 | 231 aa hypothetical protein | |||
| 19860 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoM1886DcmP |
| 19870 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoM1886DcmP |
| 19880 | inner membrane transporter YedA | |||
| 44690 | phage holin, lambda family protein | |||
| 44700 | M | M.EcoUM1886ORF23090P (100% identity) | M.EcoM1886ORF44700P | |
| 44710 | 67 aa hypothetical protein | |||
| 44770 | LexA family transcriptional regulator | |||
| 44780 | M | M.EcoUM1886ORF23130P (100% identity) | GATC | M.EcoM1886ORF44780P |
| 44790 | 162 aa hypothetical protein | |||
| 45740 | 216 aa hypothetical protein | |||
| 45750 | R | EcoUM1886ORF23640P (100% identity) | EcoM1886ORF45750P | |
| 45760 | DNA helicase | |||
| plasmid pMTY1886_NA2 | ||||
| 54920 | serine protease | |||
| 54930 | M | M.EcoUM1886ORF28565P (100% identity) | M.EcoM1886ORF54930P | |
| 54940 | recombination-associated protein RdgC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9180 | 325 aa hypothetical protein | |||
| 9190 | R | EcoUM1886ORF4740P (64% identity) | CRACAG | EcoM1886ORF9210BP |
| 9200 | R | SenH18ORF28191P (32% identity) | CRACAG | EcoM1886ORF9210AP |
| 9210 | M | M.SenH18ORF28191P (100% identity) | CRACAG | M.EcoM1886ORF9210P |
| 9220 | 48 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 45350 | endoribonuclease SymE | |||
| 45360 | R | EcoCh1GmrSDP (99% identity) | EcoM1886GmrSDP | |
| 45370 | DUF1127 domain-containing protein | |||