Escherichia coli 2006-3008 |
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Putative Escherichia coli 2006-3008 RM systems
Ref: Kalalah,A. and Eppinger,M. unpublished
REBASE ref # 33364
| Sequence length: | GenBank #: | |
| Chromosome: | 5,513,106 bp | CP101298 |
| plasmid pO103-1: | 93,980 bp | CP101300 |
| plasmid pO103-2: | 91,632 bp | CP101301 |
REBASE acronym: Eco3008
Org_num: 60379
All begin NMK63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23695 | 322 aa hypothetical protein | |||
| 23700 | R | EcosLF82ORF3455P (100% identity) | TACNNNNNNNRTRTC | Eco3008ORF23705P |
| 23705 | M | M.EcoSTEC508ORF24455P (100% identity) | TACNNNNNNNRTRTC | M.Eco3008ORF23705P |
| 23710 | S | S.EcoSTEC508ORF24455P (100% identity) | TACNNNNNNNRTRTC | S.Eco3008ORF23705P |
| 23715 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2355 | DUF2556 family protein | |||
| 2360 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco3008ORF2360P |
| 2365 | DNA-binding transcriptional regulator Fis | |||
| 5795 | PerC family transcriptional regulator | |||
| 5800 | M | M.EcoSTEC508ORF5750P (100% identity) | GATC | M.Eco3008ORF5800P |
| 5805 | LexA family transcriptional regulator | |||
| 8170 | recombination protein NinB | |||
| ??? | M | M.EcoSTEC416ORF20240P (100% identity) | GATC | M.Eco3008ORF8175P |
| 8185 | 599 aa hypothetical protein | |||
| 9940 | HD domain-containing protein | |||
| 9945 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco3008DcmP |
| 9950 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco3008DcmP |
| 9955 | drug/metabolite exporter YedA | |||
| 10685 | DUF977 family protein | |||
| 10690 | M | M.Sen58011ORF9805P (100% identity) | M.Eco3008ORF10690P | |
| 10695 | ATP-binding protein | |||
| 25870 | LexA family transcriptional regulator | |||
| 25875 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco3008ORF25875P |
| 25880 | PerC family transcriptional regulator | |||
| plasmid pO103-1 | ||||
| 28420 | 85 aa hypothetical protein | |||
| 28425 | M | M.Eco3492AORFFP (100% identity) | M.Eco3008ORF28425P | |
| 28430 | recombination-associated protein RdgC | |||
| plasmid pO103-2 | ||||
| 28610 | 103 aa hypothetical protein | |||
| 28615 | M | M.EcopO26ORF185P (100% identity) | SAY | M.Eco3008ORF28615P |
| 28620 | 72 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pO103-1 | ||||
| 28105 | modulator protein | |||
| 28110 | M | M.EcoE2855ORF5630P (99% identity) | M.Eco3008ORF28110P | |
| 28115 | R | EcoE2855ORF5630P (99% identity) | Eco3008ORF28110P | |
| 28120 | maturation control protein | |||